Gene Rfer_2899 details

Gene Information

• Locus tag: Rfer_2899
• Symbol: rho
• ID: 3963379
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3207856
• End bp: 3209118
• Gene Length: 1263 bp
• Protein Length: 420 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637917718
• Product: transcription termination factor Rho
• Protein accession: YP_524141
• Protein GI: 89901670
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.321036
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACTTAA ACGAACTCAA GGCACTGCAC GTGTCAGAAG TCCTCAAGCA AGCTGAAGAG 
CTTGAGATTG AAAACACCGG ACGCATGCGC AAGCAAGAGC TGATGTTTGC CATCATCAAG 
AAGCGCGCCC GCGCCGGTGA GCAGATCTTT GCCGATGGCG TGCTGGAAAT CCTGCCCGAT 
GGTTTTGGTT TTTTGCGCAG CCCCGACACC AGCTACACCG CCTCCACGGA CGACATTTAC 
ATCAGCCCGA GCCAGGTGCG CCGCTTCAAC CTGCACACCG GCGACATGAT TGAAGGCGAG 
GTGCGCACGC CCAAAGACGG CGAGCGCTAC TTTGCCCTGA ACAAGCTTGA AAAAGTCAAC 
GGCGGCGGGC CTGAAGAAAA CAAACACAAG GTGATGTTTG AGAACCTGAC GCCGCTGTTT 
CCCAACAAGC AAATGCGGCT CGAACAGGAC ATCAAGACCG ACGAAAACAT CACCGGCCGC 
ATCATCGACA TCATCGCGCC GATTGGCAAA GGGCAGCGCG CCCTGCTGGT GGCGCCGCCC 
AAAAGCGGCA AGACGGTGAT GATGCAGCAC ATCGCCCACG CGATTGCCGC CAACTATCCG 
GAAATTCACA TGATGGTGCT GCTGGTCGAC GAGCGGCCCG AAGAAGTGAC CGAGATGCAG 
CGCACCGTCA AGGGCGAGGT GATCGCCTCC ACCTTTGACG AGCCCGCCGC CCGCCACGTG 
CACGTGGCCG AGATGGTGAT CGAGCGCGCC AAACGCCTGG TCGAGCTGAA AAAAGACGTC 
GTTATCCTGC TGGATTCCAT CACGCGCCTG GCGCGCGCCT ACAACAATGT CGTGCCATCC 
TCCGGCAAGG TATTGACCGG TGGCGTCGAC TCCAACGCAC TGCAACGCCC CAAGCGCTTC 
CTGGGCGCGG CGCGCAATGT GGAGGAAGGC GGCTCGCTGA CCATCATCGC CACCGCCCTG 
ATCGACACCG GCAGCCGCAT GGACGAAGTG ATTTTTGAAG AATTCAAGGG CACCGGCAAC 
AGTGAAATCC ACCTGGACCG CCGCCTGTAC GAAAAACGCG TGTTCCCGTC GATCCAGCTC 
AACCGCAGCG GCACCCGTCG CGAAGAGCTG TTGCTGGCCC CCGAGATTTT GCAAAAAACC 
CGCATCCTGC GCCAGTTTCT CTACAACATG GATGAAATCG AGTCGATGGA AATGGTGCTC 
AAGCAAATGC GCGCCACCAA GAACAACAGC GAATTTTTTG ACATGATGCG CCGCGGCGGC 
TAG 

 

Protein sequence

MHLNELKALH VSEVLKQAEE LEIENTGRMR KQELMFAIIK KRARAGEQIF ADGVLEILPD 
GFGFLRSPDT SYTASTDDIY ISPSQVRRFN LHTGDMIEGE VRTPKDGERY FALNKLEKVN 
GGGPEENKHK VMFENLTPLF PNKQMRLEQD IKTDENITGR IIDIIAPIGK GQRALLVAPP 
KSGKTVMMQH IAHAIAANYP EIHMMVLLVD ERPEEVTEMQ RTVKGEVIAS TFDEPAARHV 
HVAEMVIERA KRLVELKKDV VILLDSITRL ARAYNNVVPS SGKVLTGGVD SNALQRPKRF 
LGAARNVEEG GSLTIIATAL IDTGSRMDEV IFEEFKGTGN SEIHLDRRLY EKRVFPSIQL 
NRSGTRREEL LLAPEILQKT RILRQFLYNM DEIESMEMVL KQMRATKNNS EFFDMMRRGG