| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2893 |
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| Symbol | |
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| ID | 3963107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3195022 |
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| End bp | 3198366 |
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| Gene Length | 3345 bp |
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| Protein Length | 1114 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637917712 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_524135 |
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| Protein GI | 89901664 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACGCC CTGAAGAAAG CTGGATTGAG TTGAGCCTTG ATGACCTGCC TGCCGCAAAA
ATGAATCCGT CCGAGGAAGT CCGTCGCCTG CAAACGGCAT TGTTTGACGC GCAACGCCGT
TTGCAGGCCG TGGCCGATGT TGCGGGCGGG TTGATCGGCA AACTTGAGTT CGAACTGCGT
GAGGGCGACA GTCTGCTGCT GGTCGGCTTT GATGTCCAGG CCGAACAACT GCTGGGCAAG
GCCTGTGCGC CGTTTTTGGG TCAGCCTTTG TTGATGCTGT TGCCGGGCTT GTCCGCCACG
GAGCTGCCGG CAGCCTTGTT GGAGGTGGCG CTGCACGGCG GTGTGATCGA GCCGCGCAGC
CTGCTCGGCG AGGGTTTGTT GTCGGGGAAA TCTTTCACGT TCTTTGCGTT CCAGTTGGCG
CCTGCGCGGG CCGTCGTGAA GTTCTGGGAC AGCGCGGGCG CGCTCGAAAC CCAGGCGCTG
CGCATGCGCT CGCAGCAGCA ACTCGCCGCC GTGTTCAGCC AGAGCCCGGT GGCCATATCG
CTGAGCCGTG AACGCGACGG TGCCTATGTC GACGTCAATG AACAATGGAC GCTGCTGACC
GGTCTGTCCT TGCAGGAGGT GCTGGGGCGG ACCTCGGTCG AGTTGGGTCT TTGGCCCGAT
GGCACTGCGC ATGATGACGC GTTGGCGCAG GCTGGCGAAG GCGCTCGCTT GCGCAATCTG
GACCTGCCGT TCGTCCGCCA GGACGGGCGC CAACTCGTCC TGCAAATCAA TGCTGCCCGC
ATCGAGATCG GCCACACCGC CTATTTTTTG AGTTATCTCA AAGACGTGAC ACCCGAGCGC
GCCATGCAGG CCGAGTTGCT GGCCAGTGAG CAGCTTTTGA AATCGACCAA TGAGCGGTTG
AATCAGCAAA TTCATCTGTT TGAGTCGATG GAGAATCTGG CTGCGGTGGG CTACTGGACC
TCTGGCGCTG ACCCGGCTAC TCTGCGCTGG TCCAAGGGCA TGTACCGTCT GGCCGGGCTG
GCGCCCGGCT CGGTGATGCA TCGGTCGGTG GGGCGCAGTC GCATCCGGGC CGAGGACCAG
GAGAAATTTG CCCAAGCCAG GCGTGCGGTT GATGGCGCGA TCGTGGAGTA TCAATGGGAG
CATCCGGATG GCCGCATGCA TTGGCATCGT TCGCGCATGC AACATGGGTC GGGCGAGGGC
GGCGAAGCGA TCGTTTTCGG CGTGGTGCAG GACGTCACGC ACGAACGGGC CGCGGCCCTG
GCGTTGCAGG ACCGGCTCGG CTTTATTCAA AACATCACCA GCCGGGTGCC CGGTATGGTG
TTTCAGTTGC GGCTCAAGAC CGATGGCAGA TTTCAGTTTG GCTACGTCAG CGACCTGGTG
CGAGAGATTT TCCGGGGGGT GTCGCCAGAA CAAATCATGC AGGATGCGGC GGGCATCCTG
AAGCTGCACC ACCCCGATGA CGTGTCAGAA TTTATTGCCT CCATCAAGGC TTCTGCGCGG
GAGCTTAAGC CCTGGCGCCA TGAATATCGC CTGCGCTTTG AGGACGGCGA GGTCCGTTGG
TTGCTGGGCC AGGCCACGCC TGAGCGCGAG GCGGATGGCA CGGTGCTGTG GAATGGCTTG
ATCACCGATA TCACCGCGCG CAAGCAGTCC GAGGAGCGCT TGCGTGAAAG TGAAGCCCGT
TTTCGGGCCT TGACCGAACT CTCGTCGGAC TGGTATTGGG AGCAGGACGC ACAATTTCGT
TTTGTTCGAC TCGATGGCAG CTCGCAGACC AGCATGCGCT TGCCTGAGGA CAACTATCTT
GGCGTCACAC GCTGGGAAAC CGATGCGCAG GGCGTCAGCC AGGCGCAGTG GGCAGCACAC
CGGGCGGTGT TGCAGGCGCA TGAAACCTTT CACGATTTCG AGATGCTGTG CACCGACGCG
GTCGGCTGCC TGACTTGGGT GGCCATCAGT GGCACGCCAA TTTTTGATGT GCAGGGCCAG
TTCAAGGGCT ACCGGGGCAT TGGGCGCGAC ATTTCCGAGC GCAAACGGGC CGAAGAAAAG
ATTGAGCGGC TGGCGTTTTA TGACGTGCTG ACCGATCTGC CCAATCGCCG TTTGCTGATG
GACCGCCTGC AGCAGGCGCT GGTGAGCAGC GCGCGCGAAC ACGGCGCCGG CGCGCTGCTG
TTTATCGATC TGGACAACTT CAAGGACCTC AACGACACAC AGGGCCACGA TGTGGGCGAC
GCGCTCTTGC AGCAGGTGGC AAAACGTTTG CTGGCCAGTG TGCGCGAGAC CGATACGGTG
GCGCGACTCG GTGGCGACGA GTTTGTGGTG ATGTTGCAGG GCCTGGAGCG CACCCAGGCT
GATGCCATCA CGCAAGTCGA GCAGGTGGGA CGCAAAATCA TGGCTCAGCT CAACCAGCCT
TACCGGCTGG GCAGCGCGGA GCACCACAGC ACGCCCAGCA TCGGCGTCAC CTTGTTTGAC
AACCAGCAGC AGACCCTGGA CGACCTGTTG AAACAGGCCG ATCTGGCGAT GTACGAGGCC
AAGTCTGCGG GGCGCAACAC GCTGCGCTTT TTCGACCCGA CCATGCAGGC GCTGGTGACG
CAGCGCACGG CACTGGAGCT GGAACTGCGC CACGGCCTGG CGCGTGACGA ACTGGTGTTG
TTCTACCAGC CGGTGGTTGA TCAGGATGCG CGCGTGGTCG GCGTTGAGGC GCTGGTGCGC
TGGCAGCATC CGCAGCGCGG CCTTGTTGCC CCGCTGGCAT TCATCCCGAT GGCGGAGCAA
ACCGGGCTGA TCCTGCCGCT GGGGCAGTGG GTGTTGCGGG TGGCCTGCCT ACAGCTGGTG
AGCTGGTCGG CGCAGGCGGC TACCGAACGC CTGACCATGG CGGTGAATGT GAGTGCGCGC
CAGTTCCGCC AGCCGGAGTT TGTGCAGCAG GTGCTGACCA TGTTGCGCCA GACCGGCGCC
AACCCGAAAC GTCTGAAAAT GGAACTGACC GAGAGCCTGT TGCTCACCGA TACCCAGGAC
GCCATCGCAA AAATGAGCGA GCTGCGCGAC GTCGGTGTGC GCTTCTCGCT CGATGACTTT
GGCACCGGTT ATTCGTCGCT GTCTTACCTC AAGCTGTTGC CGCTGCAACA ACTCAAGATT
GATCAGTCGT TTGTGCGCGA TGTGCTGACC GACCCGAACG ATGCCGCCAT CGCGCGCACC
GTGCTGGCCC TGGGTCAGAG CCTGGGGCTG GGGGTAGTGG CCGAAGGTGT GGAGACGGTT
GGCCAGCGTG ATTTTTTATT GCAACACGGC TGCACCCGGT TTCAGGGTTA TTTGTTTGGC
AAGCCGGTGC CCATAGCTCA ATTGAGGCTG GGGGGCGCTG ATTAG
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| Protein sequence | MERPEESWIE LSLDDLPAAK MNPSEEVRRL QTALFDAQRR LQAVADVAGG LIGKLEFELR
EGDSLLLVGF DVQAEQLLGK ACAPFLGQPL LMLLPGLSAT ELPAALLEVA LHGGVIEPRS
LLGEGLLSGK SFTFFAFQLA PARAVVKFWD SAGALETQAL RMRSQQQLAA VFSQSPVAIS
LSRERDGAYV DVNEQWTLLT GLSLQEVLGR TSVELGLWPD GTAHDDALAQ AGEGARLRNL
DLPFVRQDGR QLVLQINAAR IEIGHTAYFL SYLKDVTPER AMQAELLASE QLLKSTNERL
NQQIHLFESM ENLAAVGYWT SGADPATLRW SKGMYRLAGL APGSVMHRSV GRSRIRAEDQ
EKFAQARRAV DGAIVEYQWE HPDGRMHWHR SRMQHGSGEG GEAIVFGVVQ DVTHERAAAL
ALQDRLGFIQ NITSRVPGMV FQLRLKTDGR FQFGYVSDLV REIFRGVSPE QIMQDAAGIL
KLHHPDDVSE FIASIKASAR ELKPWRHEYR LRFEDGEVRW LLGQATPERE ADGTVLWNGL
ITDITARKQS EERLRESEAR FRALTELSSD WYWEQDAQFR FVRLDGSSQT SMRLPEDNYL
GVTRWETDAQ GVSQAQWAAH RAVLQAHETF HDFEMLCTDA VGCLTWVAIS GTPIFDVQGQ
FKGYRGIGRD ISERKRAEEK IERLAFYDVL TDLPNRRLLM DRLQQALVSS AREHGAGALL
FIDLDNFKDL NDTQGHDVGD ALLQQVAKRL LASVRETDTV ARLGGDEFVV MLQGLERTQA
DAITQVEQVG RKIMAQLNQP YRLGSAEHHS TPSIGVTLFD NQQQTLDDLL KQADLAMYEA
KSAGRNTLRF FDPTMQALVT QRTALELELR HGLARDELVL FYQPVVDQDA RVVGVEALVR
WQHPQRGLVA PLAFIPMAEQ TGLILPLGQW VLRVACLQLV SWSAQAATER LTMAVNVSAR
QFRQPEFVQQ VLTMLRQTGA NPKRLKMELT ESLLLTDTQD AIAKMSELRD VGVRFSLDDF
GTGYSSLSYL KLLPLQQLKI DQSFVRDVLT DPNDAAIART VLALGQSLGL GVVAEGVETV
GQRDFLLQHG CTRFQGYLFG KPVPIAQLRL GGAD
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