Gene Rfer_2864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2864 
Symbol 
ID3962389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3162033 
End bp3163988 
Gene Length1956 bp 
Protein Length651 aa 
Translation table11 
GC content63% 
IMG OID637917683 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_524106 
Protein GI89901635 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.414238 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTGTG CAGGAGACAA CGTGCAACCC ACACTCCATG ACGCGGTTTT GCGGCAAGCC 
CGCATGCGTT TGATTGAGCA TGGCGACTGC CCGGCCGATG GCATTGATGC CCGCCTGGCG
CGTTCATGGC AGCGCAGTCT GGCGGCGGGT CTGTCTCCCC TGGACCGCGT GGCGGACTCC
GAGCATGCCA ACGCCATCGA CTTGCGCCGG ATACTGACGC GCAACCATGA ACTGCTGGCG
CATTCACGCC CGGTGATGGA TTATTTGTTT GACCAGGTGC GCGGCAGCGA AGGCATGGTA
ATTTTGGCGG ACCAGCGCGG CACTTTGATG CGCACTTTGG GCCATCCTGA TTTCTTGAAC
AAGGCCCAGC GAGTGGCCTT GACCAGCGGT GCGTCGTGGC TGGAGCAGCA TCGCGGCACC
AACGCCATTG GCACTGCGCT GGCCGAGCTT GAGGGCGTTG AAATCCACGG CGCCGAACAT
TTTTTTGAGC GCAATGCTTT CCTGAGTTGC ACTGCCGCCC CCATCGTGTC GGCGCGCGGT
GAATTGCTGG GCATTCTGGA TATTTCAGGC GACCAGCGCA GCGATCACCC GCACACGCTG
GGGCTGGTCA ACATGGCCGC GCGCATGATT GAAAACAGCC TGATGCTCGA CGCCAGCCGG
TGCCAGACGC GCCTGCACCT GCATCCGCAG CGGGAGGGCA TTGGCACGGT GGCCGAGGGC
ATTGTGACGC TGTCGGACGA CGGCTGGATC GTTGGGGCCA ACCGCAATGG ACTGGCTTTT
TTGAAACTCG CAACACGCGC CTTGGGTGCG GTGCAATTGA CCCATGCGAT GGACGTGCGC
CTGAGCGACT TGCTCTCGCG CCCCTTGCGC AGCCCCGATC AGCCCAGGCT GGTTCGCCTG
TGTGATGGCA CTGAACTGTA TGTGCTGGTG CAGGTCGCGC AGGGCGCGCT GCAGATTGCC
TTGCCAGCGC TCGTCATGCC GAAACTTGAC GATGCGCTCA CGCAACTCGA CACCGGCGAT
GTGCGCTGGC GCAGTGTCAC CGACAAGGTG CGCCGGGTGC TGGACAAGCC GATCCCTTTG
TTGATCCAGG GCGAATCAGG GGTTGGTAAA GAGCTCTTTG CCCGCGCCGT GCATGACAGC
GGCCCGCGTC GCAGCAAGCC TTTTGTGGCG ATCAATTGCG CGGCCGTGCC TGAGAACCTG
ATTGAGGCCG AGTTGTTTGG TTATGCGCCA GGCGCGTTTA CCGGTGCACG GCGCGAGGGC
AGCCCTGGCC GCCTGCGTGA AGCCCATGGC GGCACGCTGT TTCTGGATGA GGTTGGCGAC
ATGCCGCTGG CCATGCAGGC ACGCCTGCTG CGTGTGTTGC AAGAACGCGA GGTCAGCCCG
CTGGGTGGTG GTTCGGCGGT GGCGGTGGAC TTCGGCCTGA TTTGCGCCAC GCACTGCAAA
CTGCGCGAAG CCACTGAGCT GGGGCGCTTT CGCAGTGACT TGTATTACCG CCTCAATGGA
TTGACGGTGC AACTGCCGGC CCTGCGTGAG CGCACGGATT TTGCGGCGCT GACCCAGCGG
CTGCTGGCCG GCCTGAACCC ACAGCGCAAC ATTCACGTGG CCCCGGCGTT GCTGGCGCGC
CTGAGCGCCT ACGCCTGGCC CGGCAACGTG CGCCAATACG CCAATGCTTT GCGCACCGCC
AGCGCCATGC TGGAGCCACA TGAGCTGTGT ATCGACTGGG CGCATTTGTC AGATGATTTG
CAGGAAGATT TGGCGGTGCA GGCGGCACCG ACTGCACCTC AAACGCGGGC CGCCATGTTG
TCCACGGCGG CCGAGCCCTC GCAGAACCTG AGCCAACTCT CGCGCACTGC AATCTGTCAG
GCGCTGGACG GCAGTGGCGG CAACATGTCG CAGGCGGCGC GGCGTCTGGG CATCAGCCGC
CAGACCCTTT ATCGCAAGTT GGCGGCCTTG AAATAA
 
Protein sequence
MRCAGDNVQP TLHDAVLRQA RMRLIEHGDC PADGIDARLA RSWQRSLAAG LSPLDRVADS 
EHANAIDLRR ILTRNHELLA HSRPVMDYLF DQVRGSEGMV ILADQRGTLM RTLGHPDFLN
KAQRVALTSG ASWLEQHRGT NAIGTALAEL EGVEIHGAEH FFERNAFLSC TAAPIVSARG
ELLGILDISG DQRSDHPHTL GLVNMAARMI ENSLMLDASR CQTRLHLHPQ REGIGTVAEG
IVTLSDDGWI VGANRNGLAF LKLATRALGA VQLTHAMDVR LSDLLSRPLR SPDQPRLVRL
CDGTELYVLV QVAQGALQIA LPALVMPKLD DALTQLDTGD VRWRSVTDKV RRVLDKPIPL
LIQGESGVGK ELFARAVHDS GPRRSKPFVA INCAAVPENL IEAELFGYAP GAFTGARREG
SPGRLREAHG GTLFLDEVGD MPLAMQARLL RVLQEREVSP LGGGSAVAVD FGLICATHCK
LREATELGRF RSDLYYRLNG LTVQLPALRE RTDFAALTQR LLAGLNPQRN IHVAPALLAR
LSAYAWPGNV RQYANALRTA SAMLEPHELC IDWAHLSDDL QEDLAVQAAP TAPQTRAAML
STAAEPSQNL SQLSRTAICQ ALDGSGGNMS QAARRLGISR QTLYRKLAAL K