| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2864 |
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| Symbol | |
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| ID | 3962389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3162033 |
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| End bp | 3163988 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637917683 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_524106 |
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| Protein GI | 89901635 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.414238 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTGTG CAGGAGACAA CGTGCAACCC ACACTCCATG ACGCGGTTTT GCGGCAAGCC
CGCATGCGTT TGATTGAGCA TGGCGACTGC CCGGCCGATG GCATTGATGC CCGCCTGGCG
CGTTCATGGC AGCGCAGTCT GGCGGCGGGT CTGTCTCCCC TGGACCGCGT GGCGGACTCC
GAGCATGCCA ACGCCATCGA CTTGCGCCGG ATACTGACGC GCAACCATGA ACTGCTGGCG
CATTCACGCC CGGTGATGGA TTATTTGTTT GACCAGGTGC GCGGCAGCGA AGGCATGGTA
ATTTTGGCGG ACCAGCGCGG CACTTTGATG CGCACTTTGG GCCATCCTGA TTTCTTGAAC
AAGGCCCAGC GAGTGGCCTT GACCAGCGGT GCGTCGTGGC TGGAGCAGCA TCGCGGCACC
AACGCCATTG GCACTGCGCT GGCCGAGCTT GAGGGCGTTG AAATCCACGG CGCCGAACAT
TTTTTTGAGC GCAATGCTTT CCTGAGTTGC ACTGCCGCCC CCATCGTGTC GGCGCGCGGT
GAATTGCTGG GCATTCTGGA TATTTCAGGC GACCAGCGCA GCGATCACCC GCACACGCTG
GGGCTGGTCA ACATGGCCGC GCGCATGATT GAAAACAGCC TGATGCTCGA CGCCAGCCGG
TGCCAGACGC GCCTGCACCT GCATCCGCAG CGGGAGGGCA TTGGCACGGT GGCCGAGGGC
ATTGTGACGC TGTCGGACGA CGGCTGGATC GTTGGGGCCA ACCGCAATGG ACTGGCTTTT
TTGAAACTCG CAACACGCGC CTTGGGTGCG GTGCAATTGA CCCATGCGAT GGACGTGCGC
CTGAGCGACT TGCTCTCGCG CCCCTTGCGC AGCCCCGATC AGCCCAGGCT GGTTCGCCTG
TGTGATGGCA CTGAACTGTA TGTGCTGGTG CAGGTCGCGC AGGGCGCGCT GCAGATTGCC
TTGCCAGCGC TCGTCATGCC GAAACTTGAC GATGCGCTCA CGCAACTCGA CACCGGCGAT
GTGCGCTGGC GCAGTGTCAC CGACAAGGTG CGCCGGGTGC TGGACAAGCC GATCCCTTTG
TTGATCCAGG GCGAATCAGG GGTTGGTAAA GAGCTCTTTG CCCGCGCCGT GCATGACAGC
GGCCCGCGTC GCAGCAAGCC TTTTGTGGCG ATCAATTGCG CGGCCGTGCC TGAGAACCTG
ATTGAGGCCG AGTTGTTTGG TTATGCGCCA GGCGCGTTTA CCGGTGCACG GCGCGAGGGC
AGCCCTGGCC GCCTGCGTGA AGCCCATGGC GGCACGCTGT TTCTGGATGA GGTTGGCGAC
ATGCCGCTGG CCATGCAGGC ACGCCTGCTG CGTGTGTTGC AAGAACGCGA GGTCAGCCCG
CTGGGTGGTG GTTCGGCGGT GGCGGTGGAC TTCGGCCTGA TTTGCGCCAC GCACTGCAAA
CTGCGCGAAG CCACTGAGCT GGGGCGCTTT CGCAGTGACT TGTATTACCG CCTCAATGGA
TTGACGGTGC AACTGCCGGC CCTGCGTGAG CGCACGGATT TTGCGGCGCT GACCCAGCGG
CTGCTGGCCG GCCTGAACCC ACAGCGCAAC ATTCACGTGG CCCCGGCGTT GCTGGCGCGC
CTGAGCGCCT ACGCCTGGCC CGGCAACGTG CGCCAATACG CCAATGCTTT GCGCACCGCC
AGCGCCATGC TGGAGCCACA TGAGCTGTGT ATCGACTGGG CGCATTTGTC AGATGATTTG
CAGGAAGATT TGGCGGTGCA GGCGGCACCG ACTGCACCTC AAACGCGGGC CGCCATGTTG
TCCACGGCGG CCGAGCCCTC GCAGAACCTG AGCCAACTCT CGCGCACTGC AATCTGTCAG
GCGCTGGACG GCAGTGGCGG CAACATGTCG CAGGCGGCGC GGCGTCTGGG CATCAGCCGC
CAGACCCTTT ATCGCAAGTT GGCGGCCTTG AAATAA
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| Protein sequence | MRCAGDNVQP TLHDAVLRQA RMRLIEHGDC PADGIDARLA RSWQRSLAAG LSPLDRVADS
EHANAIDLRR ILTRNHELLA HSRPVMDYLF DQVRGSEGMV ILADQRGTLM RTLGHPDFLN
KAQRVALTSG ASWLEQHRGT NAIGTALAEL EGVEIHGAEH FFERNAFLSC TAAPIVSARG
ELLGILDISG DQRSDHPHTL GLVNMAARMI ENSLMLDASR CQTRLHLHPQ REGIGTVAEG
IVTLSDDGWI VGANRNGLAF LKLATRALGA VQLTHAMDVR LSDLLSRPLR SPDQPRLVRL
CDGTELYVLV QVAQGALQIA LPALVMPKLD DALTQLDTGD VRWRSVTDKV RRVLDKPIPL
LIQGESGVGK ELFARAVHDS GPRRSKPFVA INCAAVPENL IEAELFGYAP GAFTGARREG
SPGRLREAHG GTLFLDEVGD MPLAMQARLL RVLQEREVSP LGGGSAVAVD FGLICATHCK
LREATELGRF RSDLYYRLNG LTVQLPALRE RTDFAALTQR LLAGLNPQRN IHVAPALLAR
LSAYAWPGNV RQYANALRTA SAMLEPHELC IDWAHLSDDL QEDLAVQAAP TAPQTRAAML
STAAEPSQNL SQLSRTAICQ ALDGSGGNMS QAARRLGISR QTLYRKLAAL K
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