Gene Rfer_2779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2779 
Symbol 
ID3961327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3066610 
End bp3067662 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content62% 
IMG OID637917597 
Productsigma-70 region 2 
Protein accessionYP_524022 
Protein GI89901551 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.068719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA GCCCCGTGCC TGGCCCTGAC AACGCTCCCA GACTGCCGAC ACGCGGCGTG 
TCGGATTTTG TGACAAATAG CCATCCAGCC CCCGTTGATG GTGGAGAGTA TGCTGCTGAT
TCAGTAGTAA AACACGGGCT GTCGGAACAC GCATCGCCGG CGCTGCCGGG TGCGGGCCTT
GAGGCACTTG ACGCGGCGGG CGAGTCCGGT GACGCGCTGA CCGTTTACCT GCGCCAGGTG
CGCCGCACCA CCCTGTTCAC GCCGCAGGAA GAGTTCGAAC TTGCCGGCAG GGCCCGCGCT
GGCGACTTTG CCGCCCGCCA AAGCATGATT GAACACAATC TGCGCCTGGT GGTGAGTATT
GCCAAGGCCT ATATGGGCCG TGGCGTGCCC TTGTTGGACC TGATCGAAGA AGGCAACCTG
GGTCTGATGC ACGCCATTGA TAAATTTGAG CCGGAGCGGG GATTTCGCTT TTCCACCTAT
GCCACTTGGT GGATTCGCCA ATCGGTGGAT CGTGCCTTGA TGTGCCAAGG ACGGGTGGTG
CGCCTGCCGG TGAACGTGGT CAGGGAGTTG CAGCAGGTCC TGCGGGCACG CCGGGCGCTG
GAGAGTGATG CGGCGTTCGT GGTGAGTCGA CCCGATGGCA TTCGAGTCGA AGATGTGGCC
GCCTTGTTGG GCCGCGACCC GGTCCATGTT GCCGATTTGC TGGGCCTGGC GGAGGCGCCC
AGGTCCCTGG ACGCCGCCCT GGACCGCTCG GGCGAGACTC AGACATTCGG GGATTCACTG
GTCGATGAAA TCACGGCGGA CCCGTCTGGT GTGACGCAGG TCCACGAGGT GGAGCGTTTG
CTGGAGGAGT GGGTTGGTAC CTTGTCAGAA CGCGAAAAAG AGGTGCTGGA GGGGCGCTTT
GGCTTGCATG ACCGCGAGCC TGAAACGCTG GATGTGCTCA GCGCGCGTCT GGACCTGACG
CGTGAGCGCG TGCGACAGGT CCAGAACGAG GCTTTGGCCA AGCTCAAACG CTATCTGGCG
CACCGCGGTA TCACACGGGA CGCCCTGATT TAG
 
Protein sequence
MKKSPVPGPD NAPRLPTRGV SDFVTNSHPA PVDGGEYAAD SVVKHGLSEH ASPALPGAGL 
EALDAAGESG DALTVYLRQV RRTTLFTPQE EFELAGRARA GDFAARQSMI EHNLRLVVSI
AKAYMGRGVP LLDLIEEGNL GLMHAIDKFE PERGFRFSTY ATWWIRQSVD RALMCQGRVV
RLPVNVVREL QQVLRARRAL ESDAAFVVSR PDGIRVEDVA ALLGRDPVHV ADLLGLAEAP
RSLDAALDRS GETQTFGDSL VDEITADPSG VTQVHEVERL LEEWVGTLSE REKEVLEGRF
GLHDREPETL DVLSARLDLT RERVRQVQNE ALAKLKRYLA HRGITRDALI