| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2778 |
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| Symbol | rumA |
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| ID | 3961326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3065109 |
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| End bp | 3066542 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637917596 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_524021 |
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| Protein GI | 89901550 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.882783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACG ACATGCATAA AACCGAGAAT TTTCCGCCCG ACTGGCTGCT GGTTGAATCA
CTTGATCTGG AGGCACAGGG TGTAGCTCAC CGTGCCGACG GCAAAGTGGT GTTCATCAAG
GGTGCGTTAC CGTTTGAGCT GGTGAGCGCC AATGTGCACC GCAAGAAAAA CAACTGGGAG
CAGGGCGTCG TGACCGCGAT TCACCGCGAG TCCTCGCAGC GCGTGCAGCC GGGTTGCCCC
CATTTTGGTC TGCATGAAGG TGCTTGCGGC GGCTGCAAGA TGCAGCATCT GCACGTTGGC
GCCCAGGTGG CGGTCAAGCA GCGCGTGCTG GAGGACAACC TGTGGCACCT GGGCAAAGTG
AAGGCGGACA CCATTTTGCG GCCGATTGAA GGCCCGGCCT GGGGTTACCG CTACCGGGCC
CGGTTGTCGG TGCGTTATGT GCGTAAAAAG GGCGAGCTGC TGATCGGTTT TCACGAGCGC
AAAAGCGGCT ATGTGGCCGA CATGAAAGAG TGCCCGGTGT TGCCGCCGCA TGTGAGCGAC
CTGCTGCTGC CGCTGAGGGC ATTGATAAGC GCGATGGAGG CGATGGAGAC CTGTCCCCAG
ATCGAACTCG CCTGTGGCGA CAGTGTCACA GCGCTGGTGC TGCGCCACAT GGAGCCCTTG
ACTCATGGCG ATTTGGCGCT GCTGCGCGGC TTTGCCGCCC AGCATGCCGG GGTGCAGTGG
TGGTTGCAAC CCAACGGGCC CGAGACAGCA CATCTGCTTG ATGAGGGCGG CCAGGCGTTG
AGCTATGACC TGCCGGAGTT CGGTATTCAC ATGCCGTTCA AACCGACCGA CTTCACGCAG
GTCAATCCGC ATATCAACCG GGTGTTGGTG TCGCGCGCGC TGCGACTGCT GGATGCAAAA
AGGCATGAAC GGGTGATTGA CTGGTTCTGT GGCCTGGGCA ATTTCACATT GCCGATTGCG
ACGCAGGCGC GTGAGGTGCT GGGGGTGGAG GGCAGTGAGG CACTGGTCGC GCGATCGCGT
CAAAATTTTA AGCTAAATCA GGCTCTAGCC CCCGTCAATA AGTCGCTTGC AGCTACTAAC
TTTGTAGCGA GAAATTTGTT CGAAATGACG CCTGAATTAC TGATCCAGGA CGGTGCAGCT
GACAAATGGC TGGTGGATCC GCCGCGCGAG GGCGCTGTTT CCCTGGTGCA GGCGCTGGCT
GAACTGCATC AACAAAAGCT GGACCCCATC GGTCATCCAC CCATCGTCGG AGCCGTGGGT
TGGATGCCTC CGAAACGCAT TGTCTATGTC AGTTGCAACC CGTCTACGCT GGCGCGCGAT
GCTGATCTGC TGGTGCATCA GGCGGGTTAT CGCTGTTCTT TTGCGGGCGT GGTGAACATG
TTTCCTCACA CGGCGCATGT GGAGAGCATG GCGGTGTTTG ACCTGGAAGT TTGA
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| Protein sequence | MTDDMHKTEN FPPDWLLVES LDLEAQGVAH RADGKVVFIK GALPFELVSA NVHRKKNNWE
QGVVTAIHRE SSQRVQPGCP HFGLHEGACG GCKMQHLHVG AQVAVKQRVL EDNLWHLGKV
KADTILRPIE GPAWGYRYRA RLSVRYVRKK GELLIGFHER KSGYVADMKE CPVLPPHVSD
LLLPLRALIS AMEAMETCPQ IELACGDSVT ALVLRHMEPL THGDLALLRG FAAQHAGVQW
WLQPNGPETA HLLDEGGQAL SYDLPEFGIH MPFKPTDFTQ VNPHINRVLV SRALRLLDAK
RHERVIDWFC GLGNFTLPIA TQAREVLGVE GSEALVARSR QNFKLNQALA PVNKSLAATN
FVARNLFEMT PELLIQDGAA DKWLVDPPRE GAVSLVQALA ELHQQKLDPI GHPPIVGAVG
WMPPKRIVYV SCNPSTLARD ADLLVHQAGY RCSFAGVVNM FPHTAHVESM AVFDLEV
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