| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2722 |
|---|
| Symbol | |
|---|
| ID | 3963008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3003645 |
|---|
| End bp | 3005837 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637917541 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_523966 |
|---|
| Protein GI | 89901495 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAACCGG GTTGTGAGGG CGAGGAGCGG TTCTTGCAAG AGATTCAGTT GAGGGAGTTG
GTCTGGGCAC TAGGTTCTTG CTGCGCATTG CATGGCAAAC CGTTTGATCC CGAGCTGCTG
CTCAAACAGC ATGCGCCGCC GTATTCTGCG GCCACCCTGG TCACAGCCTC TCGCGCCTTG
GGCTTTCAAG CTCGCTTGCT CGAAGCAAGT TCTGCTGAGT TGGCGCGCCT CTCAACGACC
ACCATCTTCC TGCTTACGCC TGCCGAAAAC CAGCCCGGCC TAGGCCTGCT GGTCAGCGCC
AGCGCTGATG CCGTGACCTG GATCCCAGCT GGCTCGAACA AACCCAACAC CCAGCCCTTG
GCCGAATTCG AAGCCCGCTA CAGCGGCCAA ATCCTGTTGC TGCAACCACA GGTCGAAGCG
TTCAACGACC CCGATCAGCC CCAACAAGGA TCAGCCTCGT TTGGCTTTCG CTGGTTTGTG
CCAGAACTGC TCAAACATCG CAAGGTCTGG CGTGATGTGC TGTGGGCTTC ACTGGTCTTG
CAACTGCTGG CCCTGGGCTT GCCGCTTTTC ACCCAGGCCA TCATCGACAA AGTCATCGTC
CACCAGACCC AGAGCACCTT GATTGCCATT GCCGTCGGCA TGGCGATTTT CATGGTGGCC
ACCGCCGTCC TCACCTGGGT ACGCCAGTAT CTGGTGCTGC ACACCGGCAA CCGGGTCGAT
GCGGTACTGG CGGCTGAGGT GTTTGATCAT CTCTTCAAAT TGCCACCGCG CTATTTTCAG
AACCGCCCCA CCGGCGTAGT AGCGGCGCGG CTGCATGGTG TGGAGACGAT TCGCGAGTTC
GTCAGTTCGG CCGCCGTCAC CCTAGTTCTT GACCTGCCCT TCATGCTGAT TGCAGTGGCC
GTGATGTTTT ATTACTCGGT GCCGCTGACG CTGATTGCCT TGGGAATTCT GGCGGTCATT
GGCATTTTGT CGGTACTGGT CGCCCCGGTA TTTCAGGCCC GGCTGAACGA GCAGTTCATG
CTGGGCGCGC GCAACCAGGC GTTTTTGACC GAATACATCG CAGGCTTTGA GACCGTCAAG
AGCCTGCAGT TCGAGCCGCA ACTGAAGGCC AAGTACTCAG GTTACCTGGC TACGTATTTG
CAGTCAGGCT TCCAAACCAA GCAGATAGGC AACACCTACA ACGTGATCGC CTCCACGCTG
GAGCAACTGA TGACCTTGCT CATCCTGCTG GTGGGGGCCT GGATCGTGAT GAATCCGTCC
GCCGAGGCAG CCACCGGCAA AGCAGCGGTC TTCACCATAG GCATGTTGGT GGCCTTCCAG
ATGTTTGCCG GCAAGCTGAG CCAGCCGATG ATGCGCCTGG TCGGGTTGTG GCAGCAGTTC
CAACAGGCAA GTCTGGCCGT GGCACGGCTC GGTGACCTGA TGAACGCGCC AGTTGAGCCC
TACAGTTTGA CGCCGGGCCG TCAGGGCGCG GGGCAAGGCC GCATCGAGAT CGACCGCATC
GCCTTCCGCT ATGCCGATGA CCTGCCTTAT CTGTATGAGA ACCTCAGTCT GGACATCGAG
CCGGGTCGCA CCATCGCGCT GATGGGACCC AGTGGCTCGG GCAAAAGCAC ACTGGCCAAA
CTTCTGCAGG GCTTTTATTG GCCAACCAAC GGACAGATCA AACTGGATGG CATCGATATT
CGCCACCTCA GCGCCAATGA GCTGCGCACC ACTTTTGGCG TGGTCCCGCA AGAAACCGTG
CTGTTTAGTG GCACGATTTA CGACAACCTG GCGCTGGCCA ACCCGCACGC CAGCTTCGAG
CAGGTGGTGC AGGCCTGCAA GATGGCAGAG ATTCATGCCA CCGTCGAAGC GCTGCCGCAG
GGCTACCAAA CGCCGATTGG AGAGCGCGGT GCCGGCCTTT CAGGCGGTCA AAAGCAGCGC
CTGGCGATTG CGCGTGCCTT GCTGAAGCGC CCCAAGGTAC TGATTTTTGA CGAGGCTACC
AGTGCGCTCG ATGCGGAAAC GGCCGAGCAT TTTGCCAGGA CTATTAATGG CCTCAAAGGC
AAGGTCACGA TGCTATTTAT TACCCATGCC TTACCCAAGG CTTTGCGGGT CGATGAGGTG
ATTCATCTGG GCAGGGACGG GGCGAGGCAA ATGCGCAGCG TCTCCAATCC TCCAACACCT
GCCGCAGGGC ACCAAGTTTT GGAGGGCGCT TGA
|
|---|
| Protein sequence | MQPGCEGEER FLQEIQLREL VWALGSCCAL HGKPFDPELL LKQHAPPYSA ATLVTASRAL
GFQARLLEAS SAELARLSTT TIFLLTPAEN QPGLGLLVSA SADAVTWIPA GSNKPNTQPL
AEFEARYSGQ ILLLQPQVEA FNDPDQPQQG SASFGFRWFV PELLKHRKVW RDVLWASLVL
QLLALGLPLF TQAIIDKVIV HQTQSTLIAI AVGMAIFMVA TAVLTWVRQY LVLHTGNRVD
AVLAAEVFDH LFKLPPRYFQ NRPTGVVAAR LHGVETIREF VSSAAVTLVL DLPFMLIAVA
VMFYYSVPLT LIALGILAVI GILSVLVAPV FQARLNEQFM LGARNQAFLT EYIAGFETVK
SLQFEPQLKA KYSGYLATYL QSGFQTKQIG NTYNVIASTL EQLMTLLILL VGAWIVMNPS
AEAATGKAAV FTIGMLVAFQ MFAGKLSQPM MRLVGLWQQF QQASLAVARL GDLMNAPVEP
YSLTPGRQGA GQGRIEIDRI AFRYADDLPY LYENLSLDIE PGRTIALMGP SGSGKSTLAK
LLQGFYWPTN GQIKLDGIDI RHLSANELRT TFGVVPQETV LFSGTIYDNL ALANPHASFE
QVVQACKMAE IHATVEALPQ GYQTPIGERG AGLSGGQKQR LAIARALLKR PKVLIFDEAT
SALDAETAEH FARTINGLKG KVTMLFITHA LPKALRVDEV IHLGRDGARQ MRSVSNPPTP
AAGHQVLEGA
|
|---|
| |