| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2717 |
|---|
| Symbol | |
|---|
| ID | 3963003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2996979 |
|---|
| End bp | 2998475 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637917537 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_523962 |
|---|
| Protein GI | 89901491 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00657711 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTC AATCAGACAT GGCACTTATG GCCGCAGGTT CATATTGGGA TGTACGCAAC
GGCGCAATAG ATCCACAAAA CAATCAGGAC ACCGACAACG ATGCCCCCAC CCCCACCGGC
TGGAAAGTCC TGACTCAATA CGACATGAGC GACTTTGGCC CGAACGCCAG TACCGGCCTC
AGCGCCCGCG TCTACCAAAA CACCGCCACA GGCGAAGTTG TCATCAGCTA TGGCGGCACC
GAGTTCAACA CTTCGTCCTA CGGCCTCGCG GCTGATTTTC TCAATGGCAA TATGCCCCTT
GCTATCGGTG ATGCCAGTGC ACAGGCGCTG GAAGCCGCCA AGCTATACCA GCGCGTCAAG
GCAGACGCCA CTCTCAGCGA CAACATTACA TTCACTGGTC ACAGCCTGGG TGGAGGACTT
GCCAGCGTCA TGGCGGTATG GTTTGACCGC CCGGCCTATG TATTTGCGGC CGCACCGTTT
CAGAAGTCGG CTGATTCAAC GCAAGCAACC ACACTCGCCG ACATTTTCTC CCTCAATCGC
GCGTTGCCTA ACGTGCGCTT CCAGCTTGGC AGCACTGCTG ACCCTGCGTT GCTGAACTAC
AACCCCACAA CAGACTTTGC TGCGCGCGAA GCCAATGTAA AGGCCTATGC CATAAAAGGC
GAATTGCTGG AAGCAAATTT TGGCATGTTC AGTTGGATTG AAGGCAGTAC CAACCCGCTG
TTTACCAATT CCGCTATTAC TCTGAGCGCA GGCGATAAGC ACAGCATCGA CCTGCATGTG
GCTGCGCTTT TGAGCGATAC GTTTCAAACC GAAGCGGGCA AGCTACCCAC CGCACTGGAG
CGGCTGATGG ATAGAACCCT TTACGGCGGT GACGTGCTGG GCAACAAACA AGTCATCATT
ACCAAACTCA TCCGCAACGA AGTGGGTGTG CGCAGCGATG ATGGAACCCA AGTACTGCTC
GCTGCTAACG GCATGCTCAC CCACTTCGCT TCCGACTTGA ATAAGCTAGG CACCAACATC
GCCGGCCTGA ACAAGGCAGC CCAAGATGCC CTCATCGCCC AAGGCATCGA GTGGTACTAC
TGGCAAGGCA CCGATTACGC AGGCCAGGAA TTCTTCACCC AGTCGGGCGC CCTGCTGCAA
TACACCAGCG CCATCGGTGA TGGCCTGCAA GGCGCGCAAA ACAAAGCCGC CGCCTACGCC
AAGCTCTGGC TCGACCCCAT GGCAGCAGCC CATGGTGCCT ATGGCGTGGG CACCACCTAC
GAGCAGTGGA ACGTCAACAC AGGCACCAGC GCGGTGACCG CCACGGCGCG GGATGCCGAC
AAAAGCCAGA TCTTCGTCGG CCAGGGTGGC GCCGAAACCT TCACTGGCGG TGACCTGGGT
GACGTGATCA TAGCCGGGGA TTGGGCCGAC ACCTTGAGCG GCGGCGCAAG CAACGACACC
ATCTATGCAT CAAATGGCAA CGCTACGAAC GATTCGGACT GGAGGGTTGC AGCATGA
|
|---|
| Protein sequence | MTIQSDMALM AAGSYWDVRN GAIDPQNNQD TDNDAPTPTG WKVLTQYDMS DFGPNASTGL
SARVYQNTAT GEVVISYGGT EFNTSSYGLA ADFLNGNMPL AIGDASAQAL EAAKLYQRVK
ADATLSDNIT FTGHSLGGGL ASVMAVWFDR PAYVFAAAPF QKSADSTQAT TLADIFSLNR
ALPNVRFQLG STADPALLNY NPTTDFAARE ANVKAYAIKG ELLEANFGMF SWIEGSTNPL
FTNSAITLSA GDKHSIDLHV AALLSDTFQT EAGKLPTALE RLMDRTLYGG DVLGNKQVII
TKLIRNEVGV RSDDGTQVLL AANGMLTHFA SDLNKLGTNI AGLNKAAQDA LIAQGIEWYY
WQGTDYAGQE FFTQSGALLQ YTSAIGDGLQ GAQNKAAAYA KLWLDPMAAA HGAYGVGTTY
EQWNVNTGTS AVTATARDAD KSQIFVGQGG AETFTGGDLG DVIIAGDWAD TLSGGASNDT
IYASNGNATN DSDWRVAA
|
|---|
| |