| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2714 |
|---|
| Symbol | |
|---|
| ID | 3963000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2985756 |
|---|
| End bp | 2987111 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637917534 |
|---|
| Product | Type I secretion membrane fusion protein, HlyD |
|---|
| Protein accession | YP_523959 |
|---|
| Protein GI | 89901488 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.401669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTC CCCCAATGAG ATTGTTCGCC ACCGAGGCGG CCGACTTCAC GCCCGATCTG
CTGACGATCC AGGAGCAACC GCCCTCGCGG CTGCCCCGTA CCGTCGGCTA TGTCACGGTG
GGCTTGTTTG GCCTATTGCT GGTCTGGGCG ACCTTCGGCA AGCTGGACAT CATTGCCGGC
GCCGAAGGTC GGCTGGTGCC GCGCAACTAC AGCCGGGTGC TCCAGCCCGC CGAGGCGGGG
ATTGTGCGCG AGGTGCTGGT GCGCGATGGC GAAGAAGTCA AGGCCGGCCA GGTGCTGATG
CGCATGGATG CCACCACCGC CAGTGCCGAC ATGGGTACGC TCAAGGCCGA TGCCGCGCTG
AAAGCCTTGG GCCTGCGTCG CATTGACGCA GAACTGCGCG GCCAGCCGCT GCTGATCGAC
GTCCGCGACC CACCGGAACT GGCCGTCCAA GTGCTGGCGC AATACCGGGC CAGACGCCAG
AGTCACCTGG ACGCGCTGGC GCAGGAGCAG GCCACGCTGG AGCGTGCCCA GCACGACCTG
ATGGCCGCGC GCCAGCAACT GGCCAAGCTG CAGGCCACGG TTCCGTTGTA TCAGCAGTCT
GCAAACTCCT ACGAAAAGCT GGTCAAAGAA GGTTTCGTCT CGGAACTTGG TGCCAACGAC
AAACTCCGCG AGAGGATCGA AAAGGAGCAG GAGCTCAAGA CCCAGGAAGC CAACATGGGC
TCAATGACCT CTGCGGTGGA ACAGTCGCGC AAGAAACTCG CGCAGATCAA GTCGGGCTAT
GAAAGCCAAC TGCTCAACGA GCGGGTTGAG CTGCAGAGCC AGCAGCAACG CACGGATGGT
GAGCTACAAA AACAGGTTTA TAAGTCTGGC CTGCTGGCGC TCAAGGCGAC GGGCGCCGGC
ACGATAAAAG ATATGGCGAC TTATAGCCCG GGCGCAGTGG TGCAACCGGG GGCTGCGCTG
CTCAACCTGG TTCCCAAGAA TGAACCTCTC TTTGCCGAGG TGGCGATTCA CAATGAGGAT
GTGGGGTTTG TGGCGCCGGG TCAAAGCGTC AAGGTCAAGC TGCAGGCCTA TCCGTTCCAG
AAGTACGGCA TGCTGGACGG AACAGTGGAA CTGATCAGTG CCGACTCATC GGCAAACGAT
CCGCAAAAAG CCACGGCCAT GGGACAAAGT CCGCAAAGCT ACAAGGCCCT CGTCAAGCTG
GCGAGCCAGG AACTGCGGGC ATCAAATGGC GAGGTGCTGA AACTGACGCC GGGCATGGTG
GTTCAGGCAG AAATCCATCA GGGGCAGCGG ACGGTGCTGG AATACTTGTT GTCGCCGGTG
CAGAAGGTGG CGCAGGAGGC GGGCCGGGAG AGATAG
|
|---|
| Protein sequence | MKVPPMRLFA TEAADFTPDL LTIQEQPPSR LPRTVGYVTV GLFGLLLVWA TFGKLDIIAG
AEGRLVPRNY SRVLQPAEAG IVREVLVRDG EEVKAGQVLM RMDATTASAD MGTLKADAAL
KALGLRRIDA ELRGQPLLID VRDPPELAVQ VLAQYRARRQ SHLDALAQEQ ATLERAQHDL
MAARQQLAKL QATVPLYQQS ANSYEKLVKE GFVSELGAND KLRERIEKEQ ELKTQEANMG
SMTSAVEQSR KKLAQIKSGY ESQLLNERVE LQSQQQRTDG ELQKQVYKSG LLALKATGAG
TIKDMATYSP GAVVQPGAAL LNLVPKNEPL FAEVAIHNED VGFVAPGQSV KVKLQAYPFQ
KYGMLDGTVE LISADSSAND PQKATAMGQS PQSYKALVKL ASQELRASNG EVLKLTPGMV
VQAEIHQGQR TVLEYLLSPV QKVAQEAGRE R
|
|---|
| |