| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2679 |
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| Symbol | |
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| ID | 3962009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2947642 |
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| End bp | 2949585 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637917497 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_523926 |
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| Protein GI | 89901455 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.999244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAACC GTTTTGCCGA GCCTATTTTG GCCTTGCCCC GTCCAGCCAA GCGCTTGTTG
GCGCTGGGGG TGGACGCGTT GCTGTGTGCG CTAACCGTGT GGCTGGCCTT GAGCCTGCGG
GTCGAGAACT GGGTCGCCAT CCACGGCAAC CAGTGGCTGG CGATTGGTTT GTCGCTGGCG
CTGGCGTTGC CAGTGTTCAT GATGTTTGGC CTGTACCGGG CGATTTTCCG CTATGCCGGG
TTAACCGCCT TGCTGGCGGT CACCAAGGCG GTTTTGGTTT ACGGTGTGTT GTATGCTGGG
TTACTGGCTG TTCTGGCCCT GCCTGAAGTA CCGCGCACGG TGGGACTGAT ACAACCCATC
TTTTTGCTGC TGGCGGTAGG GGCTTGGCGG ACGCTAGCCC GCTTCTGGCT TAGTGGCGAG
TATGTGAGCC GTCTCAATCG TGGCACTTTA CCCAAGGTAT TGATTTATGG GGCAGGCTCG
GCCGGGCGGC AACTGGTGGG TGCTATGGCG AGCAGTCTGG AGATGCACGC CGTGGGCTTT
CTGGATGACG ATCCGCATTT GCATGGTCGT GAGCTCAATG GCCTGCGCAT TTACAACCCG
GCACAGTTGC CCCAGTTGGT GACGCGCCTG CAAGTGAGCG ACGTGTTGCT GGCCATGCCA
TCTGCCAGCC GACAGCGGCG CAAGGATATT TTGCAATTGA CGCGTCAGGC CCGTGTGGCA
GTGCGCACCT TGCCAGGTTT GATGGACCTG GCCCAGGGCC ATGTACTGGT CAGCGACCTG
CGCGAGATTG ACATTGAAGA TCTGTTGGGC CGCGATTCCG TACCACCCGA TGCGTCGCTG
TTTGGCAAAA ACATTGCTGG CAAGGTGGTC ATGGTCACGG GTGCGGGCGG ATCGATTGGC
AGCGAGTTGT GCCATCAGAT CATCAGGCTG GCACCATCCA AACTATTGTT GGTGGAGCTG
AGCGAGTGGG CCTTGTATAC CGTGCACCAG AAGCTCCTGG AAATACTGCC TGAAGAGAAT
ATGCCCCATG TGCAGGTGCT GCCGCTGCTG GCCTCGGTGC GTGATGCGGA CCGGATGGCC
GAGATCATGC GCACCTGGCA ACCGCACACC GTGTACCACG CAGCGGCATA CAAACATGTG
CCCATGGTGG AGCACAACCC GGCCGAGGGC GTTAAAAACA ACGTGCTGGG CACCTGGACG
ACCGCCCGGG CAGCGGCCAC GCACAGAGTG AGCAATTTTG TGCTTATCAG CACCGACAAG
GCGGTGCGCC CGACCAACAT CATGGGTGCC AGCAAACGCC TGGCCGAAAT GGTGCTGCAA
GCCCTGGCCA GCCAGACCAA GCCGGGCGGC ACCTGCTTCA GCATGGTCCG GTTTGGCAAC
GTGCTGGGGT CGTCGGGCTC AGTGGTGCCC CGGTTTCGCA AGCAAATCAA GGACGGCGGG
CCGATTACCC TGACGCACGC TGACATCACC CGCTATTTCA TGAGCATTCC TGAGGCGGCG
CAACTGGTCA TTCAGGCCGG CGCCATGGCC AAAGGAGGCG ATGTATTTGT GCTGGACATG
GGCGAGCCTG TGCGCATTAT CGACCTGGCC CGCAGCATGG TGGAACTGTC GGGCCTGACG
GTGCGTGATG TGGCCAACCC GGAGGGCGAC ATCGAGGTCA AGATCACCGG CTTGCGCCCG
GGTGAAAAGC TCTATGAAGA GCTGTTGATT GGCGACAACC CCCTGCCCAC CCAGCATCCG
CGCATCATGA AGGCGCATGA GCAGTTTGTG CCGTGGCCCG AACTAAGCAC CTGCCTCGAT
GGTTTGACTT CGGCGCTGAA TGCCAATGAT GTGCCGCTGA TACGCAGCTT GCTAAAACAG
CTGGTGCCTG GCTACCAGCC CGATGGCGAG GTGGTGGACT GGGTGCATTT AGCGCAGACG
GCGTGTCTTT TACGGGCGGC ATAG
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| Protein sequence | MINRFAEPIL ALPRPAKRLL ALGVDALLCA LTVWLALSLR VENWVAIHGN QWLAIGLSLA
LALPVFMMFG LYRAIFRYAG LTALLAVTKA VLVYGVLYAG LLAVLALPEV PRTVGLIQPI
FLLLAVGAWR TLARFWLSGE YVSRLNRGTL PKVLIYGAGS AGRQLVGAMA SSLEMHAVGF
LDDDPHLHGR ELNGLRIYNP AQLPQLVTRL QVSDVLLAMP SASRQRRKDI LQLTRQARVA
VRTLPGLMDL AQGHVLVSDL REIDIEDLLG RDSVPPDASL FGKNIAGKVV MVTGAGGSIG
SELCHQIIRL APSKLLLVEL SEWALYTVHQ KLLEILPEEN MPHVQVLPLL ASVRDADRMA
EIMRTWQPHT VYHAAAYKHV PMVEHNPAEG VKNNVLGTWT TARAAATHRV SNFVLISTDK
AVRPTNIMGA SKRLAEMVLQ ALASQTKPGG TCFSMVRFGN VLGSSGSVVP RFRKQIKDGG
PITLTHADIT RYFMSIPEAA QLVIQAGAMA KGGDVFVLDM GEPVRIIDLA RSMVELSGLT
VRDVANPEGD IEVKITGLRP GEKLYEELLI GDNPLPTQHP RIMKAHEQFV PWPELSTCLD
GLTSALNAND VPLIRSLLKQ LVPGYQPDGE VVDWVHLAQT ACLLRAA
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