Gene Rfer_2678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2678 
Symbol 
ID3962008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand+ 
Start bp2946962 
End bp2947513 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content58% 
IMG OID637917496 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_523925 
Protein GI89901454 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.298698 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTACA CCGTTACCCC CACCGCCCTG CCCGAAGTCC TGATTCTTGA GCCCCGCGTA 
TTTGGCGACG CCCGTGGTTT CTTTTTTGAG AGTTTCAACC AGCGCGACTT TGCCCAGGCG 
ACCGGGCTGG ATGTAGAGTT TGTGCAAGAC AACCACAGCC GCTCCGTCAA GGGTGTGTTG 
CGGGGTCTGC ATTACCAGAT TCAACATCCC CAGGGCAAGC TGGTGCGTGT GACGCAAGGT 
GAAGTGTTCG ACGTGGTGGT GGACTTGCGC CGCGACTCGC CAAACTTTGG CAAATGGGAC 
GGCGTGCTGC TATCTGCCGA CAATAAACGT CAGTTGTGGG TTCCCCCTGG CTTTGCCCAC 
GGCTTTGTGG TGACCAGTGA CACGGCCGAA TTTTTGTACA AAACCACCGA CTACTGGTAC 
CCCGAGCATG AAAGAAGCCT GCTCTGGAAT GACCCGACCG TGGGCGTGCG CTGGCCTCTG 
ACAGGCGAAC CCCAATTGGC GGCCAAGGAT TCGGCGGCAA AGACGCTGGC TGAGGCAGAA 
GTTTTTGGCT GA
 
Protein sequence
MPYTVTPTAL PEVLILEPRV FGDARGFFFE SFNQRDFAQA TGLDVEFVQD NHSRSVKGVL 
RGLHYQIQHP QGKLVRVTQG EVFDVVVDLR RDSPNFGKWD GVLLSADNKR QLWVPPGFAH 
GFVVTSDTAE FLYKTTDYWY PEHERSLLWN DPTVGVRWPL TGEPQLAAKD SAAKTLAEAE 
VFG