| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2660 |
|---|
| Symbol | |
|---|
| ID | 3960967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2927373 |
|---|
| End bp | 2927990 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637917478 |
|---|
| Product | methylation |
|---|
| Protein accession | YP_523907 |
|---|
| Protein GI | 89901436 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4967] Tfp pilus assembly protein PilV |
|---|
| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.68265 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCC AAACCACCTG TCCTTGTGCA ACACCCATTC GCCGCCCTGC ACCCAATCGA
GCGCAGGGCG GTTTTTCCAT TGTTGAGGTG CTGGTTGCCA TCATTATTCT GAGCGTGGGC
ATGCTGGGCG CGGTCGGCAT GCAGGCAACA GCCATGCAAT CCAACAAGGA AGCCCGCAAT
CAAGCGGCAG CCACTACTTT TGCCCGTGAA CTTGCCGAGA AGATGCGGGG CAACCATACA
GTCGCCATCA AGGCTGATTC CGCTGAGAAT CCCTATATTT TTGATGCAAC CCTGAACATC
AACGACACCA TCCCAACCCC AACCGTTAAC TGCTTCTTAG ACGGGTGCCC AACCGTCAAA
GACGCCGCAA CCTGGGATGT TGCGGACTGG CAGGGACGCG TCCAGGCCAC ACTCCCCACC
CCCAGGGTCA AGGTCTGTTT TGACCAGACG CCTTTTGACA GCGCAGGAAA ACCCCAGTGG
GACTGCACAG ACGACGGAGA TATTGCCGTT CTGAAAATGA GTTGGACAAG AAAAAATACA
GCCGGAACGC TTGAATTTGC CGGAAGTACC GGCATACCGG TCGTCGTTGT GCCACTGACC
GCAGGAAGCT CCGAATGA
|
|---|
| Protein sequence | MDTQTTCPCA TPIRRPAPNR AQGGFSIVEV LVAIIILSVG MLGAVGMQAT AMQSNKEARN
QAAATTFARE LAEKMRGNHT VAIKADSAEN PYIFDATLNI NDTIPTPTVN CFLDGCPTVK
DAATWDVADW QGRVQATLPT PRVKVCFDQT PFDSAGKPQW DCTDDGDIAV LKMSWTRKNT
AGTLEFAGST GIPVVVVPLT AGSSE
|
|---|
| |