Gene Rfer_2629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2629 
Symbol 
ID3963407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp2892004 
End bp2894412 
Gene Length2409 bp 
Protein Length802 aa 
Translation table11 
GC content57% 
IMG OID637917447 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_523876 
Protein GI89901405 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.537501 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATCCGG CGGCCTGGGG CCTCTTGATT GATGGTTTGA TCGAGGCCGT CTGGCTGGTT 
GATCCGGTGA GTTTGCGCAT CCTCGCGGTC AATCACGCAG CGGCCGACTT GTTGGGTTTG
AAGGCAGAGG ATTTGGTGGG CAAGCCCGCT ATAGAGTTGA CTGTTACGCC AGAAGACCAG
TTCTTTTGGG AGGACATCGC CGCTGGTTTG GTTGATGGCA TTCACTCGGA AACCCTGTTG
CGTGGTGCCG ATGGCATGGC CGTTCCGGTG GAACGCCGTG TCAGCCGGGT TTGGCCCGAA
ACGGGGCGCG CGGTGTATGT GGTGGGCATT CGCGATCTGC GCCAGCAGCG CCGCACCGAA
GATGAACTTG AAAGCTTGGT GGCAGAGCTG CGGGCCACAC TGGAATCAAC TGCCGATGGC
ATTCTGGTCA CCGATCGCAG TGGCGACATC CGCAACTACA ACCGGCATTT TGCCGCCATG
TGGGATGTGC CCGAAGAGCT GCTTTTGAAT CCCAATGACC GGGCCTTGCA TGGCCATCTG
GCCTCGCGGG TGCTCGACGC TGCGGCATAC GAGACGCGCC TGCGGGCGAT TGCTGAGAGT
CCCTTGCTGG AAACCACTGA TGTGTTGATC CTGATCACTG GGCGTCTACT GGAGCGGGTG
TCACGGCCGC AATTCAGCAG AGGTCAAGCG ACCGGTCGGG TGTTCTCGTT TCGGGACATC
ACGCAAAGTG TTGATGCCCA GTCCAGACTG CGTCTGGCGG CCAAAGTGTT TGAGTCGAGC
GTGGATGCCA TCTTCATCAC GGATCCGGAT CTGACGATCC TGGCTGTCAA TCCGGTTTGT
GAGCGTTTGA CAGACACTTC TCAAGCTCAA TTGCTGGGGG AATCCGCCAA GAGTCTATTC
CAGGATCCGT GTGACCCTGA ACTGATGGTT CGTGTGGAAC AGGTGCTGCG CGATGAGGGC
TTCTGGCGCG GGCAGGTCTG GCTTGACCGT GCCGGTCGTT CTGCTTGTGC CGTTCATCTG
TCATGGGTTT TATTGCGTGA CGAGGACGGC GCTGTCTTGC ACACCATTTG CTTCTTCAAG
GACCTGACCG AAGAATTGGC GGCCCAAAAA CGCATTGAGC AACTGGCTTA CAGCGACGCC
CTGACAGGTC TGCCCAATAA ATTGTTGTTG TCACAGCGAG TCGGCTTTGC CTTGCGCATG
GCCGAGCGCC ACGGCTCGCA GTTTGGTGTT TTCTTTCTGG ATCTGGATCA CTTCAAGAAT
ATCAATGACT CGATGGGGCA TGTGTTTGGC GACCGGGTTC TGGTCGAAGT GGCGGAGCGC
ATCAAACGTT GTTTGCGCGA CGCCGACACC TTGTGTCGGC TCGGTGGCGA CGACTTTGTC
ATTTTTGTGC AGGAAATTGA CGCTCGTGGC GCTGAAATGC TGGCACAGCG CATTCTGGAC
CTGATGGCGC AGGCTTTTCT GATCGAGGAA ACCAGTTTTT CGGTTGGGTG CAGTATTGGT
ATCGCACTGT ATCCGGCCGA TGGCCGCTCG CTCGATGAGT TGATCAAGTG CGCTGATACG
GCGATGTATC TGGTCAAGGA GCGCGGTCGA GGCAGTTTCC GTTTTTATCA ACCGCAGATG
AATGTTGATT TGCTGTCGCG CATGAAAATG GACCATGCCA TGCGCCGGGC CATGGAGCAG
GGCATGTTCC GGCTGCACTA CCAGCCGCAA ATTTCCCTGG CCAACGGCCA GTTGGTGGGC
GTGGAGGCGC TGATTCGCTG GTTGGATGGC GAACTGGGCA ATGTGTCGCC CGTGTTGTTC
ATTCCCCTGG CAGAGGAATC GGGCTTCATC ATCACGATTG GCACCTGGGT GCTTAAAGAG
GCGGTGCGGC AAGCGGTGCT CTGGCAGAAC GCTGGCACGC CGGTCACGGT GTCGGTCAAC
GTATCGGCAC TGCAGTTTCA GCAGACCGAT TTTGTGGAGA TTGTGGCGAA CGTGCTGAAG
GATTCCGGAT TGGCACCGTA TCTTCTTGAG CTCGAATTGA CAGAGACCAT TTTGGTCAGG
GATGCCAATG AGACCTTGAA CCGTTTGCAT GCACTGGCGG CCCTCGGAGT CGCCCTGTCG
ATCGATGACT TTGGCACCGG TTATTCGAGC TTGGCTTACC TGAAAAAATT TCCCATCTCC
AAGCTCAAGA TTGATCGCTC TTTTGTCATG GGCCTGCCCG ACGACGAAGG TGACCGCGCC
ATCGTGAGTG CGACTATCGG CATGGCGCGC GGACTCAAAT TGAAAGTGGT CGCAGAGGGG
GTCGAAACCA TCGCGCAACG AGACTACCTG GCCGGGCTCA ATTGCGAATC TTTTCAAGGT
TTTCTGTGTT CCCCCGGACT GCCTGCCGAG GAGTTTGAGC GACTGATGGC GTCATTTCCG
CGCGATTAG
 
Protein sequence
MNPAAWGLLI DGLIEAVWLV DPVSLRILAV NHAAADLLGL KAEDLVGKPA IELTVTPEDQ 
FFWEDIAAGL VDGIHSETLL RGADGMAVPV ERRVSRVWPE TGRAVYVVGI RDLRQQRRTE
DELESLVAEL RATLESTADG ILVTDRSGDI RNYNRHFAAM WDVPEELLLN PNDRALHGHL
ASRVLDAAAY ETRLRAIAES PLLETTDVLI LITGRLLERV SRPQFSRGQA TGRVFSFRDI
TQSVDAQSRL RLAAKVFESS VDAIFITDPD LTILAVNPVC ERLTDTSQAQ LLGESAKSLF
QDPCDPELMV RVEQVLRDEG FWRGQVWLDR AGRSACAVHL SWVLLRDEDG AVLHTICFFK
DLTEELAAQK RIEQLAYSDA LTGLPNKLLL SQRVGFALRM AERHGSQFGV FFLDLDHFKN
INDSMGHVFG DRVLVEVAER IKRCLRDADT LCRLGGDDFV IFVQEIDARG AEMLAQRILD
LMAQAFLIEE TSFSVGCSIG IALYPADGRS LDELIKCADT AMYLVKERGR GSFRFYQPQM
NVDLLSRMKM DHAMRRAMEQ GMFRLHYQPQ ISLANGQLVG VEALIRWLDG ELGNVSPVLF
IPLAEESGFI ITIGTWVLKE AVRQAVLWQN AGTPVTVSVN VSALQFQQTD FVEIVANVLK
DSGLAPYLLE LELTETILVR DANETLNRLH ALAALGVALS IDDFGTGYSS LAYLKKFPIS
KLKIDRSFVM GLPDDEGDRA IVSATIGMAR GLKLKVVAEG VETIAQRDYL AGLNCESFQG
FLCSPGLPAE EFERLMASFP RD