Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2629 |
Symbol | |
ID | 3963407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2892004 |
End bp | 2894412 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637917447 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_523876 |
Protein GI | 89901405 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.537501 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATCCGG CGGCCTGGGG CCTCTTGATT GATGGTTTGA TCGAGGCCGT CTGGCTGGTT GATCCGGTGA GTTTGCGCAT CCTCGCGGTC AATCACGCAG CGGCCGACTT GTTGGGTTTG AAGGCAGAGG ATTTGGTGGG CAAGCCCGCT ATAGAGTTGA CTGTTACGCC AGAAGACCAG TTCTTTTGGG AGGACATCGC CGCTGGTTTG GTTGATGGCA TTCACTCGGA AACCCTGTTG CGTGGTGCCG ATGGCATGGC CGTTCCGGTG GAACGCCGTG TCAGCCGGGT TTGGCCCGAA ACGGGGCGCG CGGTGTATGT GGTGGGCATT CGCGATCTGC GCCAGCAGCG CCGCACCGAA GATGAACTTG AAAGCTTGGT GGCAGAGCTG CGGGCCACAC TGGAATCAAC TGCCGATGGC ATTCTGGTCA CCGATCGCAG TGGCGACATC CGCAACTACA ACCGGCATTT TGCCGCCATG TGGGATGTGC CCGAAGAGCT GCTTTTGAAT CCCAATGACC GGGCCTTGCA TGGCCATCTG GCCTCGCGGG TGCTCGACGC TGCGGCATAC GAGACGCGCC TGCGGGCGAT TGCTGAGAGT CCCTTGCTGG AAACCACTGA TGTGTTGATC CTGATCACTG GGCGTCTACT GGAGCGGGTG TCACGGCCGC AATTCAGCAG AGGTCAAGCG ACCGGTCGGG TGTTCTCGTT TCGGGACATC ACGCAAAGTG TTGATGCCCA GTCCAGACTG CGTCTGGCGG CCAAAGTGTT TGAGTCGAGC GTGGATGCCA TCTTCATCAC GGATCCGGAT CTGACGATCC TGGCTGTCAA TCCGGTTTGT GAGCGTTTGA CAGACACTTC TCAAGCTCAA TTGCTGGGGG AATCCGCCAA GAGTCTATTC CAGGATCCGT GTGACCCTGA ACTGATGGTT CGTGTGGAAC AGGTGCTGCG CGATGAGGGC TTCTGGCGCG GGCAGGTCTG GCTTGACCGT GCCGGTCGTT CTGCTTGTGC CGTTCATCTG TCATGGGTTT TATTGCGTGA CGAGGACGGC GCTGTCTTGC ACACCATTTG CTTCTTCAAG GACCTGACCG AAGAATTGGC GGCCCAAAAA CGCATTGAGC AACTGGCTTA CAGCGACGCC CTGACAGGTC TGCCCAATAA ATTGTTGTTG TCACAGCGAG TCGGCTTTGC CTTGCGCATG GCCGAGCGCC ACGGCTCGCA GTTTGGTGTT TTCTTTCTGG ATCTGGATCA CTTCAAGAAT ATCAATGACT CGATGGGGCA TGTGTTTGGC GACCGGGTTC TGGTCGAAGT GGCGGAGCGC ATCAAACGTT GTTTGCGCGA CGCCGACACC TTGTGTCGGC TCGGTGGCGA CGACTTTGTC ATTTTTGTGC AGGAAATTGA CGCTCGTGGC GCTGAAATGC TGGCACAGCG CATTCTGGAC CTGATGGCGC AGGCTTTTCT GATCGAGGAA ACCAGTTTTT CGGTTGGGTG CAGTATTGGT ATCGCACTGT ATCCGGCCGA TGGCCGCTCG CTCGATGAGT TGATCAAGTG CGCTGATACG GCGATGTATC TGGTCAAGGA GCGCGGTCGA GGCAGTTTCC GTTTTTATCA ACCGCAGATG AATGTTGATT TGCTGTCGCG CATGAAAATG GACCATGCCA TGCGCCGGGC CATGGAGCAG GGCATGTTCC GGCTGCACTA CCAGCCGCAA ATTTCCCTGG CCAACGGCCA GTTGGTGGGC GTGGAGGCGC TGATTCGCTG GTTGGATGGC GAACTGGGCA ATGTGTCGCC CGTGTTGTTC ATTCCCCTGG CAGAGGAATC GGGCTTCATC ATCACGATTG GCACCTGGGT GCTTAAAGAG GCGGTGCGGC AAGCGGTGCT CTGGCAGAAC GCTGGCACGC CGGTCACGGT GTCGGTCAAC GTATCGGCAC TGCAGTTTCA GCAGACCGAT TTTGTGGAGA TTGTGGCGAA CGTGCTGAAG GATTCCGGAT TGGCACCGTA TCTTCTTGAG CTCGAATTGA CAGAGACCAT TTTGGTCAGG GATGCCAATG AGACCTTGAA CCGTTTGCAT GCACTGGCGG CCCTCGGAGT CGCCCTGTCG ATCGATGACT TTGGCACCGG TTATTCGAGC TTGGCTTACC TGAAAAAATT TCCCATCTCC AAGCTCAAGA TTGATCGCTC TTTTGTCATG GGCCTGCCCG ACGACGAAGG TGACCGCGCC ATCGTGAGTG CGACTATCGG CATGGCGCGC GGACTCAAAT TGAAAGTGGT CGCAGAGGGG GTCGAAACCA TCGCGCAACG AGACTACCTG GCCGGGCTCA ATTGCGAATC TTTTCAAGGT TTTCTGTGTT CCCCCGGACT GCCTGCCGAG GAGTTTGAGC GACTGATGGC GTCATTTCCG CGCGATTAG
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Protein sequence | MNPAAWGLLI DGLIEAVWLV DPVSLRILAV NHAAADLLGL KAEDLVGKPA IELTVTPEDQ FFWEDIAAGL VDGIHSETLL RGADGMAVPV ERRVSRVWPE TGRAVYVVGI RDLRQQRRTE DELESLVAEL RATLESTADG ILVTDRSGDI RNYNRHFAAM WDVPEELLLN PNDRALHGHL ASRVLDAAAY ETRLRAIAES PLLETTDVLI LITGRLLERV SRPQFSRGQA TGRVFSFRDI TQSVDAQSRL RLAAKVFESS VDAIFITDPD LTILAVNPVC ERLTDTSQAQ LLGESAKSLF QDPCDPELMV RVEQVLRDEG FWRGQVWLDR AGRSACAVHL SWVLLRDEDG AVLHTICFFK DLTEELAAQK RIEQLAYSDA LTGLPNKLLL SQRVGFALRM AERHGSQFGV FFLDLDHFKN INDSMGHVFG DRVLVEVAER IKRCLRDADT LCRLGGDDFV IFVQEIDARG AEMLAQRILD LMAQAFLIEE TSFSVGCSIG IALYPADGRS LDELIKCADT AMYLVKERGR GSFRFYQPQM NVDLLSRMKM DHAMRRAMEQ GMFRLHYQPQ ISLANGQLVG VEALIRWLDG ELGNVSPVLF IPLAEESGFI ITIGTWVLKE AVRQAVLWQN AGTPVTVSVN VSALQFQQTD FVEIVANVLK DSGLAPYLLE LELTETILVR DANETLNRLH ALAALGVALS IDDFGTGYSS LAYLKKFPIS KLKIDRSFVM GLPDDEGDRA IVSATIGMAR GLKLKVVAEG VETIAQRDYL AGLNCESFQG FLCSPGLPAE EFERLMASFP RD
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