| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2569 |
|---|
| Symbol | |
|---|
| ID | 3960899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2829817 |
|---|
| End bp | 2831160 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637917388 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_523817 |
|---|
| Protein GI | 89901346 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.175958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCGT TGCTGCTCAG CCTGATGATC ATTGCCCTGA TGCTCGCTCT GATGGGGCTG
CGGGTGCCGA TTGCGGTGGC CATGTTTGTG GCCGGCGCAG TGGGCTACGT CCTGCAGGCG
GGCTGGGGAC CGTTCAGCAA CTTTCTCAAC AGCCTGGCTT TTGCCCGCTT GGCCAACTAC
GAGCTGTCGG TCATTCCCCT GTTCATTTTG ATGGGCCATT TCGCCACCCA GGGCGGCATC
TCGAAAGCGT TGTTTGGCTT CGCCAGTGCC GTAATGTCGC GCTTCAAGGG TGGCCTGGCG
ATGGCGACGG TGCTGGCCAG TGCGGCTTTT GGGGCCATTT GTGGCTCGTC GGTGGCCACG
GCAGCCACCA TCACTTCGGT GGCGCTGCCC GAGCTGACGC GCCACGGCTA CTCCGGCCGG
CTCGCCACCG GCACGCTGGC GGCCGGCGGC ACGCTGGGCA TTTTGATACC GCCCTCGGTG
CCGCTGGTGA TCTATGCCAT TTTGGCCGAG CAAAACATTG CCAAGCTGTT TGCGGCGGCT
TTTGTCCCTG GAATCATCGC CATGCTGGGT TACATGATCG CCATTGCTGT CTATGTACGC
CTGGTGCCGG GCCATGCACC CGACAATGAC ACGCCCCTCA ACCCGTCCCA GGGAGATCGC
AGCAACCCCC TCGCGACGCA GGCACTGCGC GGCGTCGTGC CGATCGCGCT GGTATTTTTG
GCCGTTTTTG GCGGCATTTA CGGCGGCTGG TTCACCCCCA CCGAGGGCGC CGCCGTGGGC
GCGGCGGCCA CATTGGGGGT CGCGCTGCTC AAGGGCGAAC TCAATTTCGT CAAGCTCAAA
TACTGCTTTT ACGCCACGGC GCAGGGCTCG GCCATGATCT TCCTGATCTT TCTGGGCGCC
GACTTGATGA ATTCGGCGCT GGCGCTGACC CAAGTGCCCA ACCAGCTCGC CGCCGTGGTG
CAAAGCTGGG GCTTGTCGCC CTTGTGGGTG GTGTCAAGCA TCTTGCTGTT TTATGTGGTG
CTGGGCTCGG TGATGGACGA GCTGTCGATG CTCTTGCTCA CCATTCCCAT CTTCTTTCCG
CTGGTGATCG GGCTTGACTT TGGCATGCCG CCCGAGTCGG TCGGTATCTG GTTTGGCATC
ATGGTGCTGA TGACGGTCGG CTTTGGCCTG CTGGCGCCAC CGGTGGGGCT CAATGTGTAC
GTTGTTAATA GTCTGGCACC CGGGGTGCCG ATCGCAGAAA GCTACCGCGG CGTGCTGCCA
TTTTTGGTCA GCGATGTGTT GCGTACACTC CTTCTTTTGT TCTTTCCTGG CATCTCACTG
TGGCTGGTTA AATTCATCAC CTGA
|
|---|
| Protein sequence | MSPLLLSLMI IALMLALMGL RVPIAVAMFV AGAVGYVLQA GWGPFSNFLN SLAFARLANY
ELSVIPLFIL MGHFATQGGI SKALFGFASA VMSRFKGGLA MATVLASAAF GAICGSSVAT
AATITSVALP ELTRHGYSGR LATGTLAAGG TLGILIPPSV PLVIYAILAE QNIAKLFAAA
FVPGIIAMLG YMIAIAVYVR LVPGHAPDND TPLNPSQGDR SNPLATQALR GVVPIALVFL
AVFGGIYGGW FTPTEGAAVG AAATLGVALL KGELNFVKLK YCFYATAQGS AMIFLIFLGA
DLMNSALALT QVPNQLAAVV QSWGLSPLWV VSSILLFYVV LGSVMDELSM LLLTIPIFFP
LVIGLDFGMP PESVGIWFGI MVLMTVGFGL LAPPVGLNVY VVNSLAPGVP IAESYRGVLP
FLVSDVLRTL LLLFFPGISL WLVKFIT
|
|---|
| |