| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2557 |
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| Symbol | |
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| ID | 3960887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2815312 |
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| End bp | 2817783 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637917376 |
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| Product | nitrite reductase (NAD(P)H) large subunit, NirB |
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| Protein accession | YP_523805 |
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| Protein GI | 89901334 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.323031 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATGC GTGTAGAACC CAAGGTCAAA ATGAAACTGG TGATGATCGG CAACGGCATG
GCCGGTGTCC GCACGCTTGA AGAGCTGCTG AAGATCGCAC CCGACCTGTA CGACATCACC
GTCTTTGGCG CCGAGCCGCA CCCCAACTAC AACCGCATCT TGCTGTCGCC GGTGCTGGCC
GGCGAGCAAA CGATTGACGA GATTGTTCTC AACTCATGGG ACTGGTACAC GGACCACGGC
ATCACCCTGC ACGCCGGCAA AAAAGTAGTG GCGGTGGACC GCGCCAGGCG ACTGGTACGT
GCCCTCGACG CTGACAACAA GGTCACCGAA GTGCCCTACG ACCGGCTGTT GATGGCCACC
GGCTCCAAGC CTTTCATCCT GCCCGTTCCC GGCAAGGACC TGGAAGGTGT GATTGCCTAC
CGCGACATTG CCGACACCAA CGCCATGATC GACGCGGCCA CCAAATACAA GAATGCCGTC
GTGATCGGCG GCGGTCTGCT CGGGCTGGAA GCGGCCAACG GCCTGATGCG CCGGGGCATG
AACGTCAGCG TGGTGCACGT GATGCCGACG CTGATGGAGC GCCAGCTCGA CAACGTCGCG
GGCAAGATGC TGCAAAAATC ACTGGAGGAC CGGGGCCTGA AATTCCTGAT TGGCGCGCAG
ACGCAGGAAC TGGTCGCAAG CGACGATGGC CGCGTCAAGA GCATCAAGTT CAAGGACGGC
ACTTCAGCTG CCGCCGATCT GGTGGTGATG GCCGTGGGCA TCCGCCCCAA CACCGAGCTG
GCCGAAGCCA TGCGCCTGCA CTGCAACAAG GGCATTGTGG TGACTGACAC GCTGCAGACC
GTCACCGACG CGCGCATTTA CTCGGTCGGT GAGTGCGCGG CGCACCGGGG CATCGCCTAC
GGTCTGGTGG CGCCCCTGTT CGAGCAAGCC AAGGTGGCGG CCAACCATCT GGCGCAGTAC
GGCATTGGCC GCTATGTCGG CTCGCTGACC TCGACCAAAC TCAAGGTCAC CGGCATCGAC
CTGTTTTCAG CCGGGGACTT TCTGGGCGGT GACGGCACCG AAGAACTGGT GCTGAGCGAC
CCCTATGCGG GCGTCTACAA AAAGCTCGTC ATCAAGGACG ACAAACTGGT GGGTGCCTGC
CTGTACGGCG ACACGGTGGA CGGCAGCTGG TACTTCAAGT TGCTGCGCAA CGGCCGCTCA
ATCGCCGACA TCCGCGACAA GCTGATGTTT GGGGAAAGCA ATATTGGCGA CGCCGGTGTT
GAAGGCCACA ACAAGGCCGC CAGCATGGCC GACAGCGACG AAGTGTGTGG CTGCAACGGT
GTCACCAAGG GCACCATCTG CAAGGCCATC AAAGAAAAGG GCCTGTTCAC GCTGGACGAG
GTGCGCAAGC ACACCAAGGC CAGCGCGTCG TGTGGTTCGT GCACGGGGCT GGTTGAGCAG
CTGTTGATGT TCACCGCCGG AGGTGACTAC TCAGCCACGC CGAAGATGAA AGCCATGTGC
GCTTGCACCG AGCACGGCCA CCAGGCAGTG CGCGACGCCA TTGTGGCCAA CAAGCTGCTG
AGCATTGCCC AGGTCTTCAA CTTCATGGAA TGGAAAACAC CCAATGGCTG TGCCTCCTGC
CGTCCCGCCA TCAACTACTA CCTGATCAGC AGCTGGCCCA AAGAGGCCAA GGACGATCCG
CAAAGCCGCT TCATCAATGA GCGCAGCCAC GCCAACATCC AGAAGGACGG CACCTACAGC
GTGATTCCGC GCATGTGGGG CGGCGAGACC ACGGCCAGCG AACTGCGCCG CATTGCCGAC
GCGGTCGACA AGTACAAGAT CCCGACCGTC AAGGTCACCG GCGGCCAGCG CATTGACCTG
CTGGGCGTGA AGAAGGAAGA CCTGGTCAGC GTCTGGAAGG ACATCGGCAT GCCCAGCGGC
CATGCCTACG CCAAGGCCTT GCGCACCGTC AAAACCTGCG TCGGCTCGGA GTGGTGCCGC
ATGGGCACGC AGGACAGCAC ACAGATGGGC AAGGACCTGG AACGCGCCAT GTGGCGCATG
TACGCCCCGC ACAAGGTCAA GTTCGCCGTC AGCGGCTGCC CGCGCAACTG CGCCGAGGCC
GGCATCAAGG ACGTCGGCAT CATCGGGGTC GACAGCGGCT GGGAAATGCA CATTGGCGGC
AACGGCGGCA TCAAGACCGA GGTGGCGCAG TTCTTCACCA AGCTCAAAAC GGCGCAGGAA
GTGCTGGAGT ACACCGGCGC CTTCATGCAG CTGTACCGCG AGGAAGGCTG GTACCTGGAA
CGCACCGTGC ATTACCTCAA CCGCGTCGGC ATGGACTACG TGAAGAAGAA GATTCTGGAA
GACGCCGAGA ACCGCCAGGC CTTGTGGGCG AAGCTGCAGT TCAGCCTGGA TGGCGAGCCT
GATCCCTGGT TTGAGCACAG CCGGGCCGAG GTGGATCTGC GCCAGTTCGA CAAACTGGCT
GTCCCCGCCT GA
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| Protein sequence | MDMRVEPKVK MKLVMIGNGM AGVRTLEELL KIAPDLYDIT VFGAEPHPNY NRILLSPVLA
GEQTIDEIVL NSWDWYTDHG ITLHAGKKVV AVDRARRLVR ALDADNKVTE VPYDRLLMAT
GSKPFILPVP GKDLEGVIAY RDIADTNAMI DAATKYKNAV VIGGGLLGLE AANGLMRRGM
NVSVVHVMPT LMERQLDNVA GKMLQKSLED RGLKFLIGAQ TQELVASDDG RVKSIKFKDG
TSAAADLVVM AVGIRPNTEL AEAMRLHCNK GIVVTDTLQT VTDARIYSVG ECAAHRGIAY
GLVAPLFEQA KVAANHLAQY GIGRYVGSLT STKLKVTGID LFSAGDFLGG DGTEELVLSD
PYAGVYKKLV IKDDKLVGAC LYGDTVDGSW YFKLLRNGRS IADIRDKLMF GESNIGDAGV
EGHNKAASMA DSDEVCGCNG VTKGTICKAI KEKGLFTLDE VRKHTKASAS CGSCTGLVEQ
LLMFTAGGDY SATPKMKAMC ACTEHGHQAV RDAIVANKLL SIAQVFNFME WKTPNGCASC
RPAINYYLIS SWPKEAKDDP QSRFINERSH ANIQKDGTYS VIPRMWGGET TASELRRIAD
AVDKYKIPTV KVTGGQRIDL LGVKKEDLVS VWKDIGMPSG HAYAKALRTV KTCVGSEWCR
MGTQDSTQMG KDLERAMWRM YAPHKVKFAV SGCPRNCAEA GIKDVGIIGV DSGWEMHIGG
NGGIKTEVAQ FFTKLKTAQE VLEYTGAFMQ LYREEGWYLE RTVHYLNRVG MDYVKKKILE
DAENRQALWA KLQFSLDGEP DPWFEHSRAE VDLRQFDKLA VPA
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