| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2540 |
|---|
| Symbol | |
|---|
| ID | 3960260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2799418 |
|---|
| End bp | 2800104 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637917359 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_523788 |
|---|
| Protein GI | 89901317 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTC GGGTGCTGGT GGTCGAAGAC GACCGCGAAA TACGGGCGCT GATGCAGTCC
TCTTTGTCGG TGGAGGGCTT TGAGGTACAG ACCGCCGTAT CGCTGAGCGA GGCCAGCGCG
CTCTTGCGCC ACAGTCCGCC CGATGTCATC GTGCTGGATC TGGGACTGCC CGACGGCGAC
GGCGTGCAAC TGGTGCGCGA GGTGCGCACG CGCCATTCCT TGCCCATCGT TGTGGTGTCC
GCCCGCCACC AGGAGGCGCA AAAAATCCAG TTGCTTGACG CCGGTGCCGA CGATTACCTG
ACCAAACCGT TCAGTGTGGG CGAACTGCTG GCCCGCATTC GGGTGGCGCT GCGCCACCGC
GGCACCGCGC TGGCCGCAGC GGTCACGGTG CATGAGCTGG ACGATCTGCG CATTGATCTG
GCGGCCCACA GCGTCCTGCG CAACGGCGAG GTGCTGCATC TCACGCCGAC CGAGTTCAAG
CTGCTCGCGC GCTTGGTGCG CAGTGCGGGC CGCGTGGTGA CGCACCGGCA GTTGCTGCTC
GATGTCTGGG GCCCCGAGTT CACGGAGCAC ACGCACTATT TGCGGCTCTA CATGGCCCAG
TTGCGGGCCA AGATCGAGCG CGACCCGGCC GAGCCGCGCC ATCTGCTGAC CGAGACCGGT
GTCGGTTATC GCCTGGCAGC CGTTTGA
|
|---|
| Protein sequence | MTLRVLVVED DREIRALMQS SLSVEGFEVQ TAVSLSEASA LLRHSPPDVI VLDLGLPDGD
GVQLVREVRT RHSLPIVVVS ARHQEAQKIQ LLDAGADDYL TKPFSVGELL ARIRVALRHR
GTALAAAVTV HELDDLRIDL AAHSVLRNGE VLHLTPTEFK LLARLVRSAG RVVTHRQLLL
DVWGPEFTEH THYLRLYMAQ LRAKIERDPA EPRHLLTETG VGYRLAAV
|
|---|
| |