| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2480 |
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| Symbol | |
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| ID | 3962973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2732280 |
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| End bp | 2734859 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637917299 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_523728 |
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| Protein GI | 89901257 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.966176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACAGCA TCCTGATCAG CCCGAACATC AGACACCCTT ACGGCCTTCT CCTGTTTGTG
TTTCTGGTTG CTGCCGGTCT GGCGGGCAAC TATTTCAGTT TTCCGGTTTT TCTCAATATT
GATTTCCTGT TCGGCAGCAT CTTTGCGATG CTGGCCCTCC AATACTTCGG GCTCGGTTGG
GGCACACTGG CTGCCGCGCT GATCGGCAGC TACACCTACG TTCTGTGGAA CCACCCTTAC
GCCATCATCA TCCTCGGCGC TGAGGCGCTG TGGGTTGGTG TTCTGATGAC GCGGCGCCGG
GTCGGCATGG TGCTGGCCGA TACCTTGTTT TGGCTGCTGG TTGGCATGCC ACTGGTGTTC
TTTTTTTACC GCCTGGTGAT GCATGTGCCG CTCAGTAGCG TTACCTTCCT CATGACCAAG
CAGGCCAGCA ACGGCATGGC CAATGCCCTG CTGGCCCGGC TGATTTTTAC CGGGTTGGTG
CTCGGGTTTC GATCGTCGCA GACCTCATTT CGCGAGATCA TCTACAACCT GCTGACCGCT
TTTGTCGTGT TTCCGGGCTT GATCATGCTT GCGATTGGCA GCCGCGCTGA TTTTGCTGAA
ACCGACCACC GGATTCGGGC CTCATTGCTG CAAGACAGCG CCCGCCTGGA TCACTATGTG
AACACATGGG TGATCAACAG GAAATCTGCC GTTCTCAAGC TGGCCGAGAC GGCGGCCGTA
AAGACGCCGC AGCAGATGCA AGCTCATCTG GAGCAGGCGC AGAAGTTGGA TTCCAATTTT
TTGCGCCTTG GGCTGATGGA CGCTCAGGCG ACAACTACTG CCTACTATCC ATTGCTTGAT
GAGTTAGGGC ACAGCACCAT TGGAAAGAAC TTCGCGGATG GACCGTTCAT TCCAGACCTC
AAGCGAACCC TTCAACCGAT GGTCTCGGAG GCCATCATGG ACAGGATCGG CATCGCCAGG
CCCATGGTGG CGGCGCGAGC GCCCGTGCTC CTGGATGGGA AATACGGCGG CTATGTGACC
GGCATACTGA GTCTGACGCA GATACGCGAG CAACTTGACA GCAGCACGGT GGGTCATGCG
GTGCTCTACA CCTTGCTGGA CAAAAAAAAC CAGGTCATCA TGAGCAATCG CAGCGACCAA
ACGGTCATGA CACCTTTTAA ACGCGGCAGA GGCCAGCTCA GTCAACTCGA TGCCGGCATC
AGTCAGTGGG TGCCTTCAGT GGCTGCCAAT ACCTCAATCT CCGATCGTTG GCAAGAATCG
GTTTATGTTG CTCAAACTGC CGTCGGTGAT CTGGCCGAGT GGACATTGAT CCTGGAGCAG
CCGGTCGCGC CTTTCCAGAA AACGCTCTAC AAGAATTACA GCGACAAACT GACCCTGTTG
TTTGTGATTT TGCTGGCGGC GTTGATACTG GCCGAAGTCC TGAGCCGCCA AATCATGGGC
ACGCTCGATG TTCTGGGTGC ATTGACCCGC AACTTGCCGT TCAGGGTTGC AGCCAGCGAC
AACGACATTG TGTGGCCTGA AACAGCGATC AAGGAGACCA ATGATCTGAT TGGCAATTTC
CGGGAGATGT CCAAACTGCT GAAGGCACAG TTTGATGAGA TTCAGGAGGT CAACGAAACG
CTGGAGCAGC GAGTGGCAGA TCAGACCGCA GAGTTGAAGG CGAGTGAATT GCACTTGCAG
ACCATCATCG AGAACGAACC CGATTGCATC AAAATTATTG ATGCCCAGGG GCGCTTGCTG
CACATGAATC CGGCCGGACT GGCGATGATC GAGGCCGACG CGCTGGCGCA GGTGGCAGGG
CGCCCGGTGC TTGATCTCAT CGCCCCCGAA TACCGCGCTG CTTATTGGGA TTTGCATCAG
CGTGTGCTGG CGGGTGCAAG GATGCAAATG CAGTTCGAGG TGATCGGTCT CAAGGGTGGC
CGGCGCTGGC TGGAGACCCA TGCAGTGCCC ATGCTCGACC ATGCCGAGAC GATGCAGCTG
GCCGTCACCC ACGACATTAC CGAGCGTAAA CAGATGGAAG AGCAGGTGCG TCAACTCGCC
TTCTATGACC CGCTGACCCT GCTGCCCAAC CGTCGCCTGC TCACCGATCG CTTGGGCCAG
GCCATGGCAG CCAGCAAGCG CAGTGCCTGC TATTGCGCGC TGATGATTCT GGACCTGGAC
AATTTCAAAC CACTCAATGA CACGCATGGG CACCTGTTGG GCGATTTGTT GTTGATTGAG
GTGGCCAGGC GCCTGACCCA TTGTGTGCGC GAGATCGACA CCGTCGGGCG TTTCGGTGGC
GACGAGTTTG TGGTGATGCT CAGTGAGTTG AGTACCGATC AGGCGCTATC GACCGCGCAG
GCGCAAGCCG TTGCCGAGAA AATCCGCAGC AGCCTGTCTG AACCCTACCT GATCACGGTG
CATCACGAGA GCCGCAGCGA CACCTTGTTG ACGCATTACT GCACGGCCAG CATCGGTGTG
GTGATCTTCA TGGACAACGA AACCCCGCAG GACGACATCC TCAAGTGGGC CGATGCGGCC
ATGTACCGGG CCAAGAAAGT TGGGCGCAAT ACAGTCAGGT TTTATGACTC AAAAGCCTGA
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| Protein sequence | MNSILISPNI RHPYGLLLFV FLVAAGLAGN YFSFPVFLNI DFLFGSIFAM LALQYFGLGW
GTLAAALIGS YTYVLWNHPY AIIILGAEAL WVGVLMTRRR VGMVLADTLF WLLVGMPLVF
FFYRLVMHVP LSSVTFLMTK QASNGMANAL LARLIFTGLV LGFRSSQTSF REIIYNLLTA
FVVFPGLIML AIGSRADFAE TDHRIRASLL QDSARLDHYV NTWVINRKSA VLKLAETAAV
KTPQQMQAHL EQAQKLDSNF LRLGLMDAQA TTTAYYPLLD ELGHSTIGKN FADGPFIPDL
KRTLQPMVSE AIMDRIGIAR PMVAARAPVL LDGKYGGYVT GILSLTQIRE QLDSSTVGHA
VLYTLLDKKN QVIMSNRSDQ TVMTPFKRGR GQLSQLDAGI SQWVPSVAAN TSISDRWQES
VYVAQTAVGD LAEWTLILEQ PVAPFQKTLY KNYSDKLTLL FVILLAALIL AEVLSRQIMG
TLDVLGALTR NLPFRVAASD NDIVWPETAI KETNDLIGNF REMSKLLKAQ FDEIQEVNET
LEQRVADQTA ELKASELHLQ TIIENEPDCI KIIDAQGRLL HMNPAGLAMI EADALAQVAG
RPVLDLIAPE YRAAYWDLHQ RVLAGARMQM QFEVIGLKGG RRWLETHAVP MLDHAETMQL
AVTHDITERK QMEEQVRQLA FYDPLTLLPN RRLLTDRLGQ AMAASKRSAC YCALMILDLD
NFKPLNDTHG HLLGDLLLIE VARRLTHCVR EIDTVGRFGG DEFVVMLSEL STDQALSTAQ
AQAVAEKIRS SLSEPYLITV HHESRSDTLL THYCTASIGV VIFMDNETPQ DDILKWADAA
MYRAKKVGRN TVRFYDSKA
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