| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2470 |
|---|
| Symbol | |
|---|
| ID | 3960285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2716277 |
|---|
| End bp | 2717119 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637917289 |
|---|
| Product | phosphomethylpyrimidine kinase |
|---|
| Protein accession | YP_523718 |
|---|
| Protein GI | 89901247 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.176006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTACCA ATATATTCAA ATTTGAGTAC CCCCGGGTTC TTTCCATTGC AGGCTCAGAC
AGCGGTGGTG GCGCGGGTAT ACAGGCTGAT CTGAAAACAT TTTCGGCGCT GGGTTGCTAC
GGCATGACCG CCATTACCGC GCTCACGGCG CAAAACACCT GCGGCGTGCG CGCGATCCAT
GCCGTGCCGC CGCAGATGCT GCGCGACCAG ATTGACGCCG TGATGGAAGA CATTGGCGCT
GATGCGGTCA AGATCGGCAT GTTGCACTCG CCGGAAATCG TGCAAACGGT CGCCCAGGCG
ATTGACCGGC ATGCCATGCA CCATGTGGTG TTCGACCCGG TGATGGTGGC CACCAGTGGG
GCGGTGTTGA TTGACGACGC TGCGATCGAG GTGCTGGTGC GCGAGCTATT TGGCCGCGCT
GCAGTGATCA CCCCCAACCT GGATGAGGCC GCGCTGCTGG TGGGCTACCC CCTGGTCTCA
AAGCAAGATA TGGAGCGGGC GGCACTTGAC TTGCTGGCCA AAGGCGCGCG CGCTGTTTTG
CTCAAAGGGG GTCACTTGCC GGGCCACAAC GTGATGGACT TGCTGCTGAG CGCCGGCGGT
GAAAAACTCT GGATGGAGGC GCCACGCATT GACAGTCCCA ACACCCACGG CACCGGCTGC
ACCCTGTCGT CGGCCATCGC GGCCTATCTG GCCCTGGGCG CTTCACTGCC CGATGCCGTG
CAACAGGCCC GCAACTTTGT GCGCGAGGCC TTGCAGGCGG GTGCACAGGT GCGTACCGGC
AAGGGCAGTG GACCGCTTAA CCATGGCTAC GCACCGATTG CCATGCGACC GCGTAAATCT
TGA
|
|---|
| Protein sequence | MITNIFKFEY PRVLSIAGSD SGGGAGIQAD LKTFSALGCY GMTAITALTA QNTCGVRAIH
AVPPQMLRDQ IDAVMEDIGA DAVKIGMLHS PEIVQTVAQA IDRHAMHHVV FDPVMVATSG
AVLIDDAAIE VLVRELFGRA AVITPNLDEA ALLVGYPLVS KQDMERAALD LLAKGARAVL
LKGGHLPGHN VMDLLLSAGG EKLWMEAPRI DSPNTHGTGC TLSSAIAAYL ALGASLPDAV
QQARNFVREA LQAGAQVRTG KGSGPLNHGY APIAMRPRKS
|
|---|
| |