| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2441 |
|---|
| Symbol | |
|---|
| ID | 3961053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2687634 |
|---|
| End bp | 2688464 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637917259 |
|---|
| Product | carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_523689 |
|---|
| Protein GI | 89901218 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA TCCTCGCAAC AACGATGCTT GTTTCTCTGC TGAATCCGCT TTCAGCTCAA
ACAGTGAGTG CCAACAGTGC GGGGTCTGAA CCTGCGCTTG TTATTTCTCG ATCAGGCACG
CGGCCACCAG GTCAGGGGTC AACCGAGAAC TTCACCGGTT CAGTGAAGAT TGACTACCTC
TTTAGAGCAG AGGAGCCTAA ACGCGCATCC GGGGCTTACG TCACGTTTTC CCCAGGAGCG
CGCACTGCAT GGCACACCCA CCCGTTGGGT CAGACGCTGA TCGTCACCGC CGGTGTCGGA
CGTGTTCAGC GCTGGGGGGA AGCCATTGAA GAAATCAGGC CTGGCGATGT GGTGCGGATC
CCGCCTGGTG TGAAACACTG GCATGGGGCT GCACCGAATA ACGCCATGAC GCATTTGGCA
GTGCAGGAGC AAAAGGATGG CAAGACGGTC GCCTGGTTGG AACAGGTCAG CGACGAGCAA
TACCTGCCAG CATCGATGGG GGCAGCCAAA ACTTCACCAA CCCCCTCCCG AGCGCAGCAG
TTGTTTGGTG ACGTTGCTCC CAAGTTGGCG GATCTGACCG ACAACGTGCT TTATGGCGAT
GTGTGGGCGC GACCGGGTTT GTCGCCACGT GATCGCAGCC TTGTGACAGT GAGCGCACTG
ATCGCGATGA ATCGGCCTGA CCAATTGCGT TCGCACATGA CTCTTGCCCG CCAGAACGGA
CTCTCGCAAG ACGAGTTGAT TGAAACAGTC ACTCACCTGG CCTTCTACGC CGGTTGGCCC
AGTGCCGTGT CTGCGGCCAC CATGGCCAAG GAAGTGTTTG CCAAACCCTG A
|
|---|
| Protein sequence | MKTILATTML VSLLNPLSAQ TVSANSAGSE PALVISRSGT RPPGQGSTEN FTGSVKIDYL
FRAEEPKRAS GAYVTFSPGA RTAWHTHPLG QTLIVTAGVG RVQRWGEAIE EIRPGDVVRI
PPGVKHWHGA APNNAMTHLA VQEQKDGKTV AWLEQVSDEQ YLPASMGAAK TSPTPSRAQQ
LFGDVAPKLA DLTDNVLYGD VWARPGLSPR DRSLVTVSAL IAMNRPDQLR SHMTLARQNG
LSQDELIETV THLAFYAGWP SAVSAATMAK EVFAKP
|
|---|
| |