Gene Rfer_2356 details

Gene Information

• Locus tag: Rfer_2356
• ID: 3961491
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2595120
• End bp: 2596928
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637917173
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_523604
• Protein GI: 89901133
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase; [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAATC CTGATACCCC CAGCAGCAAT GGTCGTGAGT CTTCTGTCAC CCACGACGCG 
CCAAGTGCGG CGCAGCTGAT GCGTCGGCGA GCCGAAGACA TGGCCCTTGA AAAATTGGCG 
CAATTGCCCC AGAGTCTGCA AGTGCTGTCA CCCGGGGAGA TGCAACAACT GATGCACGAG 
CTGGCCGTGC ATCAGATCGA GCTGGAGATG CAAAACGACG AACTGCGCCG GGTACAACAG 
GAACTGGAAA CCTCACGCGC ACGCTATTTC GACCTGTATG ACCTGGCCCC GGTGGGCTAC 
ATCACCGTCA GTGACGCCGG GATGATCCTG GAGGCCAACC TCACCGCAGC CACCCTGCTG 
GGCGTGCCGC GCAGCGCGCT GGTGAAGCGG CCGATCAGCC GCTTCATTGT CAAGTCGCAG 
CAGGATATCT ACTACCAGTA CCGCAAACAG CTCGTGGAAA CGGGTCAAGC CCAGACCTGC 
GAGCTGCAGG TGCTGCACAG TGAGGGCTCC GCGCTCTGGG TCAGTTTGGC CGCCACCGTC 
GCGCAGGAAA CAGATGGCGC GACCATATTG CGCATCGTGC TGAACGACAT CTCCGAACGC 
AAGTTGCTGG ATCAGTCGCT GCGGGAGACC AACGTCAAGC TGGAGAGTGC CCTGTTTCTG 
GCCGACAAAG CCAACCTTGC CAAGTCGGAG TTTCTGTCGG GCATGAGCCA TGAGTTGCGC 
TCACCACTGA ATGCGGTTTT GGGCTTTGCG CAGTTGATTG AGACGGGCAC GCCTGCGCCC 
ACGCCGGGCC AGCAAGCCAG CCTGGAACAG ATTCTGCGGG GCGGCTGGTA TTTGCTGACG 
CTGATCAACG AAATTCTTGA CCTGTCCCTG GTCGAGTCCG GCAAGCTGTC GCTGTCGATG 
GAACCGGTCT TGCTGTCCGA AAAGTTTTCC GATTGCCGAG CCATGATCGA CCCGCAGGCG 
CAAAAGGCCG GCATCCGTGT CAGCTTTGCG TCATTCGACA GTCCATGCTT TGTTGAGGCC 
GACCGCACCC GCCTGAAGCA AGTGATCGTC AATTTGCTGA GCAATGCCAT CAAATACAAC 
CGCGCTGGCG GCTCTGTCGA AGTGACCTGC AGCACGCCCG CAGCGGGACG TATCCGCATC 
AGCGTGATTG ATACCGGACC GGGTTTGTCC GACAACAAAC TGGCCCAACT GTTCCAGCCC 
TTCAATCGTC TCGGCCAGGA GGCTGGCACG CAGGAGGGCA CCGGCATCGG TCTGGTGGTT 
TGCAAGCGGC TGGTTGAAAT GATGGGCGGT GAAATCGGTG TCCATAGCCG CGTTGGGATT 
GGCAGCGAGT TCTGGTTTGA GCTCAAGCTC GCAGCGCCAC CGCCAACGGC CGTCAGCGGT 
GAGGCGTCGG AGCTGGCACA GGCGCAGGTT CAGGATGAGG CCGAGGTACA CACCTTGCTG 
TATATCGAGG ACAACCCCGC CAACATGGAA CTGGTCGAGC GGATCGTTGA GCGCCGTTCC 
GAGCTGCGCT TGTTAAAGGC GGGCAATGGT TCGAGCGGTA TCGCGCTGGC GCGCATGCAT 
CTGCCCCAGG TGATCCTGAT GGACATCAAT CTGCCTGGCA TCAATGGCTT TCAGGCCTTG 
AAAACCCTGC GTGAGGACCC TGCAACCCAA CACATCCCGG TGCTGGCCCT GAGTGCCAAT 
GCCATGCCCC ACGACATTCA AGCTGGCCTG GCGGCAGGCT TTCTTCGCTA CCTGACCAAG 
CCCATCAAAA TCAAGGAGCT GATGCAGGCC TTCGATGTGG CGCTGGAAGC TGCAAAACTG 
CCCCAATAA 

 

Protein sequence

MSNPDTPSSN GRESSVTHDA PSAAQLMRRR AEDMALEKLA QLPQSLQVLS PGEMQQLMHE 
LAVHQIELEM QNDELRRVQQ ELETSRARYF DLYDLAPVGY ITVSDAGMIL EANLTAATLL 
GVPRSALVKR PISRFIVKSQ QDIYYQYRKQ LVETGQAQTC ELQVLHSEGS ALWVSLAATV 
AQETDGATIL RIVLNDISER KLLDQSLRET NVKLESALFL ADKANLAKSE FLSGMSHELR 
SPLNAVLGFA QLIETGTPAP TPGQQASLEQ ILRGGWYLLT LINEILDLSL VESGKLSLSM 
EPVLLSEKFS DCRAMIDPQA QKAGIRVSFA SFDSPCFVEA DRTRLKQVIV NLLSNAIKYN 
RAGGSVEVTC STPAAGRIRI SVIDTGPGLS DNKLAQLFQP FNRLGQEAGT QEGTGIGLVV 
CKRLVEMMGG EIGVHSRVGI GSEFWFELKL AAPPPTAVSG EASELAQAQV QDEAEVHTLL 
YIEDNPANME LVERIVERRS ELRLLKAGNG SSGIALARMH LPQVILMDIN LPGINGFQAL 
KTLREDPATQ HIPVLALSAN AMPHDIQAGL AAGFLRYLTK PIKIKELMQA FDVALEAAKL 
PQ