Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2337 |
Symbol | |
ID | 3962670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 2568727 |
End bp | 2570274 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637917153 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_523585 |
Protein GI | 89901114 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCATCC GTCAAAACTC TCACCCCCCA ACGCAATCCG ATGGTCAAGA TTCCTTCGCC AAGGCCGAGC ACATGATGGC CATTGCCATG GACAAGGGTT TGCACCGGTT TGAATGGATA CACACCAGGG CCGACGGCAC GAACTTCGTC GCCGAGGTCA CGCTCTCGAT CGTCGAACTG GAAAGCAGGC CCGTCATCTA TTGTGTCTGG CGCGACATCA CTGAACGTAA GCGCATCGAA GAGACACTGC AACGGCAGAA CTACATACTG TCCGCCGTCA TCGAAAACTT CCCAGGCGGC ATCTCACTGT TCGACGCTGA GCTGCGCCTG GCGGCGCACA ACGACCAGTT CAAGCAGTTG CTCGATCTTC CCGATTCGCT GCTCGGCAAT CCCGGGGTGG GTTTCGAAGA CATCGCTCGC TACAACACGG GTCGCGGCGA GTACGGCCCC GGTGACCCCA AGCAGCAGAT CGCAGCCATC GTTGCCCGGG CAAGCCACTT TCAGGCCCAC AAATTCGAGC GAGTTCGCCC CAACGGAACG GTGCTGGAGA TCCGTGGCAT GCCCCTGCCA GACGGCGGTT TCGTCAGCAC CTACATGGAT ATCAGCGAGC GCAAGCTGGC CGACTCGCAG CAACGTATTG CCGCCACTGC CTTTGAATCT CAGGAGGGCA TGTTCATCAC CGATGCGGCC GGCACGATCC TGCGCGTCAA CCGGGCCTTC ACGGACATTA CCGGCTATAC GGCCGAAGCG GCCGTGGGTC AGAATTCGCG CCTGCTCAAA TCTGGCAGAC ACGACACAGC CTTTTATGCT GCCATGATGG ACAGCCTGCG ATGTAGCGGC AGATGGCAGG GAGGACTCTG GAATCGGCGC AGGAACGGCG AGGTCTACCC CGAATGGCTC AGGATCACCG CGGTCAAGGG CGACGCGGGA GAAATCACCA ACTACGTTGC CACCTTAACC GACATCACCG TGCGCAAGCG GGCGCAAGAC GAAATCAGGA ATCTGGCGTT TCATGACGCG CTGACTCAAC TGCCGAACCG TCGTCTTCTC AGCGACCGCC TGAGCCAGGC CCTGGCAGCG AGCAAGCGCA GTGCCTGTTA TGGCGCATTG ATGTTTCTTG GTTTGGACAA CGTCAAGCCG CTCAATGACA CGCACGGGCA TGAGGTGGGC GATTTGCTGC TGGTTGAGGC GGCGGATCGA CTCACGCGGT GTGTACGTGA AATAGACACT GTTGCGCGCT TCGGCGGCGA TGAGTTTGTG GTGATGTTGG TCGATTTGGA GGTGAATCTG CCGCAAGCGG CCCTGCAGGC CCGGTGTATT GCTGAAAAAG TCCGCGTTGC ATTGGCTCCG CCCTATCTGC TGACTCTCAA TCACGGGTCG AACACCAACA CCACCGTTGA GCATCATTGC ACGGTGAACA TCGGTGTGGC GTTGTTCATG GACCACAAAG GCAGCACAGA CGACTTCCTG AAGTGGGCTG ATATCGCAAT ATACAAAGCC AAAGAAGCGG GGCGCAATGC CGCTGCGTTC CATGACTGCG ACGCATGA
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Protein sequence | MSIRQNSHPP TQSDGQDSFA KAEHMMAIAM DKGLHRFEWI HTRADGTNFV AEVTLSIVEL ESRPVIYCVW RDITERKRIE ETLQRQNYIL SAVIENFPGG ISLFDAELRL AAHNDQFKQL LDLPDSLLGN PGVGFEDIAR YNTGRGEYGP GDPKQQIAAI VARASHFQAH KFERVRPNGT VLEIRGMPLP DGGFVSTYMD ISERKLADSQ QRIAATAFES QEGMFITDAA GTILRVNRAF TDITGYTAEA AVGQNSRLLK SGRHDTAFYA AMMDSLRCSG RWQGGLWNRR RNGEVYPEWL RITAVKGDAG EITNYVATLT DITVRKRAQD EIRNLAFHDA LTQLPNRRLL SDRLSQALAA SKRSACYGAL MFLGLDNVKP LNDTHGHEVG DLLLVEAADR LTRCVREIDT VARFGGDEFV VMLVDLEVNL PQAALQARCI AEKVRVALAP PYLLTLNHGS NTNTTVEHHC TVNIGVALFM DHKGSTDDFL KWADIAIYKA KEAGRNAAAF HDCDA
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