| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2247 |
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| Symbol | |
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| ID | 3962048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2461057 |
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| End bp | 2462142 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637917066 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_523500 |
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| Protein GI | 89901029 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.141085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAAA AAAGAATCGC CGTCATCGCG GGTGACGGTA TTGGCCAGGA AGTCATGCCC
GAAGGGGTGC GTGTGCTGGA GGCGGTGGCG CGCAAATTTG ACATTGACCT GCGGTTTGAC
CATTTTGATT TTTCCAGCTG GGATTATTTC GAGAAGCACG GCCAGATGCT GCCTGACAAC
TGGAAAGATC AAATTGGGGA GCACGACGCG ATCTACTTCG GCGCGGTTGG CCGGCCCGAC
AAAATTGCCG ATCATGTCTC GCTATGGGGT TCCCTGTTGC TCTTTCGACG CGAGTTCGAT
CAGTATGTGA ACCTTCGTCC GGTACGCCTG ATGCCGGGCA TCATTGCGCC GGTGGTGCGG
CGTGATGGCA GCCGACGCGA GCCGGGTGAA ATCGACATGC TGATCGTGCG CGAAAATACC
GAGGGTGAAT ACTCCAGTGT GGGTGGGCGC ATGTACGCGG GCACTGAACG CGAAATCGTG
CTGCAGGAAA CCGTGATGTC GCGCGTTGGC GTCGATCGGG TGTTGAAGTT TGCGTTTGAA
TTGGCCCAGT CGCGGCCCAA AAAGCATTTG ACCAGCGCCA CCAAATCCAA CGGCATTGCG
ATCACGATGC CGTATTGGGA TGAGCGTGTG GTAGAAATGG CAAAGGCTTA TCCTGAAGTG
AAAGTGGACA AATTTCACAT CGATATCTTG TGCGCCCACT TTGTGCAGCG GCCCGATTTT
TTTGATGTGG TGGTGGCCAG CAATCTGTTT GGCGACATCC TGAGTGATCT GGGGCCGGCG
TGCACTGGCA CGATTGGCAT TGCCCCCAGT GCCAATTTGA ACCCCGAAAG GAAATTCCCG
TCGCTGTTTG AACCGGTCCA CGGCTCGGCG CCCGACATTG CCGGCAAAGG CATCGCCAAC
CCCATTGGTC AGATTTGGAG CGGCGCCTTG ATGCTGGACT TTCTAGGACA CAGGGATGCG
CATAATGCAG TGATGAAAGC AATAGAAAAA GTGCTTGATC CTGCGAGCGG GGCGCCACGT
ACGCAGGATT TGGGTGGGAC GGCAAGCACG AAGGATGTCG GGTTGGCCAT CGTGGATGCG
CTCTAG
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| Protein sequence | MSQKRIAVIA GDGIGQEVMP EGVRVLEAVA RKFDIDLRFD HFDFSSWDYF EKHGQMLPDN
WKDQIGEHDA IYFGAVGRPD KIADHVSLWG SLLLFRREFD QYVNLRPVRL MPGIIAPVVR
RDGSRREPGE IDMLIVRENT EGEYSSVGGR MYAGTEREIV LQETVMSRVG VDRVLKFAFE
LAQSRPKKHL TSATKSNGIA ITMPYWDERV VEMAKAYPEV KVDKFHIDIL CAHFVQRPDF
FDVVVASNLF GDILSDLGPA CTGTIGIAPS ANLNPERKFP SLFEPVHGSA PDIAGKGIAN
PIGQIWSGAL MLDFLGHRDA HNAVMKAIEK VLDPASGAPR TQDLGGTAST KDVGLAIVDA
L
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