| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2220 |
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| Symbol | |
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| ID | 3961951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2434175 |
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| End bp | 2435674 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637917040 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_523474 |
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| Protein GI | 89901003 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.462189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGTG TGCCTGGATA TCTTTACAAG GTGGCAGCCC ACCTGCTCCA TGCCACTTTC
CACGCATCCC TGCGCCGCCC CTTGAAGTGG CTTAGGGTGC AAGGTCTGCG CGAGAAAGTA
ACGCTGAATG CCGTACCCGA TGGTGTTTTA CGCATTGTCT GCGTCCACGA CCTGAGCGAG
CGCAAGAAAT TTGAAGAGTC GCTGCGCTAC CAAGCCACCC ATGATGAGCT CACCGGTCTG
CCGAATCGCT GGTTGTTTCA CCTGCACCTG AGTCAAGCCC TGGTGCGTGC CCGGCGCACA
GGTCTGAGAG TGGCGGTTTT GTTTCTGGAT TTGGACTACT TCAGAAGTGT CAACGACAGT
TTTGGGCACA CTACCGGAGA CGCCCTGCTG GTGCAAGTCG GCACTCGTAT CCGCAGCACC
CTGCGCGAAA ACGACACGCT GGCCCGCCTG GGCGGCGACG AGTTCGCCAT TCTGCTCGCC
GATATGAAAA ATGTGGATGA AGCGGTGCGT GTGGCCAGCA AGCTCCTGCT GTCGCTGCAG
GCCTCGTACC GGCTGCAAGA CCAGGATGTC TATTCCGGCG GCAGTCTGGG TCTGGCTTTT
TATCCGGATG ATGCGCAGGA CAGTGACACC CTGCTGCGCT ACGCTGACAT GGCCATGTAC
CAGGCCAAAC AGGCCGGGCG CGGAGGCTAT GCCTGCTATT CGCAGGAAAT GGACCTGCGC
GGGCACGAAA ACATGCGGCT GCATACACGG CTGAAAGAAG CCATGGCCCA AGGAATTTTG
CAGTTGCATT ACCAGCCGCA GGTGGATGTG GAAAGTGGTG CGATCGTGGG GGCAGAAGCC
TTGTTGCGCT GGCACGACCC GGAGCTGGGC CATGTATCTC CGGCAAGGTT CATACCGGTT
GCCGAGGCCA CCGGCCTGAT TTTGCCTTTG TCGGACTGGG TGCTGGAGAC GGCGTGCCAG
CAAATTGCCG CCTGGACTCA GGCCGGCACG CCATTACGGG TGGCCGTCAA TGTTTCGGCG
CAGCAATTTC GCCAGCGCAA TCTGCCCGAG CAGGTACGCG CAGCACTGGC GCGCACCGGT
GCGCAGGCCC AATGGCTGGA CATTGAAATC ACCGAGTCGG TGGCCATGAC GCAGCCCGCG
CAGGCGCGTG AACAGCTCGA TGCCCTGGTG GGCTTGGGCT GCCGCATCGC CCTGGATGAC
TTTGGTACCG GCTATTCGTC GCTCGCCTAT CTCAAGGCCC TGCCGGTGAG CAAGCTCAAA
ATTGACAAGA GTTTCATGGA CGGCATTCCC CAGGACGCCA ATGACGTCGC CATTTCCCGG
GCCATCATTG CCTTGGCCAA AAGTCTGGGG TTGACACTGG TCGCCGAGGG GGTGGAAACC
GATGCCCAGC TGGCCTTTTT GCGCCAATAC GGTTGCGAGG TTTACCAGGG CTGGCTGTTT
GCCAAAGCGA TGACGGTGCA GGAGTTGACG TCACGCCTTC ACGGCGTTCA AGTTCCCTGA
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| Protein sequence | MTRVPGYLYK VAAHLLHATF HASLRRPLKW LRVQGLREKV TLNAVPDGVL RIVCVHDLSE
RKKFEESLRY QATHDELTGL PNRWLFHLHL SQALVRARRT GLRVAVLFLD LDYFRSVNDS
FGHTTGDALL VQVGTRIRST LRENDTLARL GGDEFAILLA DMKNVDEAVR VASKLLLSLQ
ASYRLQDQDV YSGGSLGLAF YPDDAQDSDT LLRYADMAMY QAKQAGRGGY ACYSQEMDLR
GHENMRLHTR LKEAMAQGIL QLHYQPQVDV ESGAIVGAEA LLRWHDPELG HVSPARFIPV
AEATGLILPL SDWVLETACQ QIAAWTQAGT PLRVAVNVSA QQFRQRNLPE QVRAALARTG
AQAQWLDIEI TESVAMTQPA QAREQLDALV GLGCRIALDD FGTGYSSLAY LKALPVSKLK
IDKSFMDGIP QDANDVAISR AIIALAKSLG LTLVAEGVET DAQLAFLRQY GCEVYQGWLF
AKAMTVQELT SRLHGVQVP
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