Gene Rfer_2184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2184 
Symbol 
ID3960984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp2381930 
End bp2383555 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content58% 
IMG OID637917005 
Productputative glutamate synthase (NADPH) small subunit 
Protein accessionYP_523439 
Protein GI89900968 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1144] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit 
TIGRFAM ID[TIGR02179] 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.544077 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAC CATTTGCAAT CACGCTAGAT GTTGGCACCT CGCTGGCTAA CCACACGGGC 
TCGTGGCGCA CCGAGCGGCC GGTCTATCTG AACCGCATCC CGCCCTGTAA CAGCCAGTGC
CCGGCGGGCG AAAACATCCA GGCCTGGCTG TTTCACGCCG AGTCGGGTGA TTATGAAAAA
GCCTGGCGCG AACTGGTCGA ACAAAATCCG TTTCCGGCCA TCATGGGGCG GGTTTGCTAT
CACACCTGCG AGGCAGCGTG CAATCGGGCC CAGCTTGACG CCCCTGTAGG TATCAATTCG
GTGGAACGGT TTCTGGGCGA TGAGGCGATT GCGCTCGGCT GGAAATTCGA ACGTCCCTCT
GTGGCATCTG GCAAGAAGGT GCTGGTAGTG GGTGCGGGAC CGTCTGGCTT GTCAGCGGCC
TATCAACTGG CACGCCTGGG TCATCAAGTC ACGGTGTTTG AAGCAGGCCC CATGCCAGGC
GGCATGATGC GTTTTGGTAT TCCCCAATAC CGTTTGCCGC GTCAGGTGCT CGACGCCGAG
GTGCAGCGCA TTGTCGATCT GGGTGTGAAC ATTGAGTACA ACACCAAAGT GAGCAACGTG
CTGGAAGCCA AAGAGCAAGG CGGCTTTGAG GCCGTCTTTC TGGCAGTCGG CGCCCACATT
GCCAAGCGCG CCTACATTCC AGCCGGTGAC TCAGCCAAGG TGCTCGATGC AGTCTCGGTG
CTGCGCTCCA TGGAGGGCGA AGACAAACCC ATGCTCGGTC GGCGGGTCAT TGTTTATGGC
GGGGGCAACA CGGCGATTGA CGTGGCGCGC ACCGCCAAGC GCCTGGGCGC CACCGAATCC
ATCATTGTCT ATCGGCGCAA TCGCGAAAAA ATGCCCGCCA GCGACCTGGA AGTGGAAGAC
GCGCTACAAG AAGGCGTGAT GATCAAGTGG TTGTCCACCA TCAAGCAAGC TGGTGAGTCA
TCCATTACGG TCGAAAAAAT GGCGCTCGAC GACAAGGGCT TTCCACAGCC CACTGGCGAG
TTTGAAACCC TGGAAGCGGA TTCTCTGGTA CTGGCGCTAG GTCAGGACGT GGATCTGTCG
CTGATTGAAG GGGTACCAGG TCTGGTCGTC AAGGACGGTG TGGTGGTGGT CGACGCCCAG
ATGATGACCG GTCACGCTGG TATTTTTGCC GGTGGCGACA TGATTCCTGC CGAGCGCAAC
GTCACGGTGG CGATTGGGCA CGGCAAAAAA GCAGCACGTA ACATCGATGC CTGGTTGCGC
GCTGAAGTCT ATGCCGCTGC ACCCAAGAGT GAGTTGGCCA GCTTTGACAA GCTCAACACC
TGGTACTACA GCGACGCACC CAAAACGGTG CGCCCGATGC TGGACATGAT CCGTCGCCAA
TCGACGTTTG AGGAAGTGCA AGGCGGTCTG GACGAAAGCA ATGCGCTGTT TGAGGCGCGC
CGCTGTCTCT CATGCGGAAA CTGCTTTGAA TGCGACAACT GCTACGGCGT GTGCCCGGAC
AATGCGGTCA TCAAGCACGG CCCGGGCAAG GGTTTTGATT TCAATTACGA CTACTGCAAG
GGCTGCGGCA TCTGCGTCTC AGAGTGCCCT TGCGGCGCGA TCAAGATGGT GCCAGAAGAT
ATTTGA
 
Protein sequence
MEKPFAITLD VGTSLANHTG SWRTERPVYL NRIPPCNSQC PAGENIQAWL FHAESGDYEK 
AWRELVEQNP FPAIMGRVCY HTCEAACNRA QLDAPVGINS VERFLGDEAI ALGWKFERPS
VASGKKVLVV GAGPSGLSAA YQLARLGHQV TVFEAGPMPG GMMRFGIPQY RLPRQVLDAE
VQRIVDLGVN IEYNTKVSNV LEAKEQGGFE AVFLAVGAHI AKRAYIPAGD SAKVLDAVSV
LRSMEGEDKP MLGRRVIVYG GGNTAIDVAR TAKRLGATES IIVYRRNREK MPASDLEVED
ALQEGVMIKW LSTIKQAGES SITVEKMALD DKGFPQPTGE FETLEADSLV LALGQDVDLS
LIEGVPGLVV KDGVVVVDAQ MMTGHAGIFA GGDMIPAERN VTVAIGHGKK AARNIDAWLR
AEVYAAAPKS ELASFDKLNT WYYSDAPKTV RPMLDMIRRQ STFEEVQGGL DESNALFEAR
RCLSCGNCFE CDNCYGVCPD NAVIKHGPGK GFDFNYDYCK GCGICVSECP CGAIKMVPED
I