Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2184 |
Symbol | |
ID | 3960984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2381930 |
End bp | 2383555 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637917005 |
Product | putative glutamate synthase (NADPH) small subunit |
Protein accession | YP_523439 |
Protein GI | 89900968 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases [COG1144] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit |
TIGRFAM ID | [TIGR02179] 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.544077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAC CATTTGCAAT CACGCTAGAT GTTGGCACCT CGCTGGCTAA CCACACGGGC TCGTGGCGCA CCGAGCGGCC GGTCTATCTG AACCGCATCC CGCCCTGTAA CAGCCAGTGC CCGGCGGGCG AAAACATCCA GGCCTGGCTG TTTCACGCCG AGTCGGGTGA TTATGAAAAA GCCTGGCGCG AACTGGTCGA ACAAAATCCG TTTCCGGCCA TCATGGGGCG GGTTTGCTAT CACACCTGCG AGGCAGCGTG CAATCGGGCC CAGCTTGACG CCCCTGTAGG TATCAATTCG GTGGAACGGT TTCTGGGCGA TGAGGCGATT GCGCTCGGCT GGAAATTCGA ACGTCCCTCT GTGGCATCTG GCAAGAAGGT GCTGGTAGTG GGTGCGGGAC CGTCTGGCTT GTCAGCGGCC TATCAACTGG CACGCCTGGG TCATCAAGTC ACGGTGTTTG AAGCAGGCCC CATGCCAGGC GGCATGATGC GTTTTGGTAT TCCCCAATAC CGTTTGCCGC GTCAGGTGCT CGACGCCGAG GTGCAGCGCA TTGTCGATCT GGGTGTGAAC ATTGAGTACA ACACCAAAGT GAGCAACGTG CTGGAAGCCA AAGAGCAAGG CGGCTTTGAG GCCGTCTTTC TGGCAGTCGG CGCCCACATT GCCAAGCGCG CCTACATTCC AGCCGGTGAC TCAGCCAAGG TGCTCGATGC AGTCTCGGTG CTGCGCTCCA TGGAGGGCGA AGACAAACCC ATGCTCGGTC GGCGGGTCAT TGTTTATGGC GGGGGCAACA CGGCGATTGA CGTGGCGCGC ACCGCCAAGC GCCTGGGCGC CACCGAATCC ATCATTGTCT ATCGGCGCAA TCGCGAAAAA ATGCCCGCCA GCGACCTGGA AGTGGAAGAC GCGCTACAAG AAGGCGTGAT GATCAAGTGG TTGTCCACCA TCAAGCAAGC TGGTGAGTCA TCCATTACGG TCGAAAAAAT GGCGCTCGAC GACAAGGGCT TTCCACAGCC CACTGGCGAG TTTGAAACCC TGGAAGCGGA TTCTCTGGTA CTGGCGCTAG GTCAGGACGT GGATCTGTCG CTGATTGAAG GGGTACCAGG TCTGGTCGTC AAGGACGGTG TGGTGGTGGT CGACGCCCAG ATGATGACCG GTCACGCTGG TATTTTTGCC GGTGGCGACA TGATTCCTGC CGAGCGCAAC GTCACGGTGG CGATTGGGCA CGGCAAAAAA GCAGCACGTA ACATCGATGC CTGGTTGCGC GCTGAAGTCT ATGCCGCTGC ACCCAAGAGT GAGTTGGCCA GCTTTGACAA GCTCAACACC TGGTACTACA GCGACGCACC CAAAACGGTG CGCCCGATGC TGGACATGAT CCGTCGCCAA TCGACGTTTG AGGAAGTGCA AGGCGGTCTG GACGAAAGCA ATGCGCTGTT TGAGGCGCGC CGCTGTCTCT CATGCGGAAA CTGCTTTGAA TGCGACAACT GCTACGGCGT GTGCCCGGAC AATGCGGTCA TCAAGCACGG CCCGGGCAAG GGTTTTGATT TCAATTACGA CTACTGCAAG GGCTGCGGCA TCTGCGTCTC AGAGTGCCCT TGCGGCGCGA TCAAGATGGT GCCAGAAGAT ATTTGA
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Protein sequence | MEKPFAITLD VGTSLANHTG SWRTERPVYL NRIPPCNSQC PAGENIQAWL FHAESGDYEK AWRELVEQNP FPAIMGRVCY HTCEAACNRA QLDAPVGINS VERFLGDEAI ALGWKFERPS VASGKKVLVV GAGPSGLSAA YQLARLGHQV TVFEAGPMPG GMMRFGIPQY RLPRQVLDAE VQRIVDLGVN IEYNTKVSNV LEAKEQGGFE AVFLAVGAHI AKRAYIPAGD SAKVLDAVSV LRSMEGEDKP MLGRRVIVYG GGNTAIDVAR TAKRLGATES IIVYRRNREK MPASDLEVED ALQEGVMIKW LSTIKQAGES SITVEKMALD DKGFPQPTGE FETLEADSLV LALGQDVDLS LIEGVPGLVV KDGVVVVDAQ MMTGHAGIFA GGDMIPAERN VTVAIGHGKK AARNIDAWLR AEVYAAAPKS ELASFDKLNT WYYSDAPKTV RPMLDMIRRQ STFEEVQGGL DESNALFEAR RCLSCGNCFE CDNCYGVCPD NAVIKHGPGK GFDFNYDYCK GCGICVSECP CGAIKMVPED I
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