| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2169 |
|---|
| Symbol | |
|---|
| ID | 3961298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2364147 |
|---|
| End bp | 2365871 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637916989 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_523424 |
|---|
| Protein GI | 89900953 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTG AAGAACTAAA TTTGGCTCCG GCCATTATCA AAGCCGTGCT TGAGCAGGGC
TACGAGACCC CCACCCCGAT TCAAGCGCAA GCCATTCCGG CCGTGCTCGA CGGCCACGAC
CTGCTTGGCG GCGCCCAAAC CGGTACCGGT AAAACAGCCG CGTTTGTACT GCCCATGCTG
CACAAGCTGA GCCAGAGTGA AGCGGCCCGC AACAAATTCG GCGGCATTGG CATTCGCGCC
CTGGTGCTGA CACCCACCCG TGAACTCGCC GCCCAAGTCG AAGAATCGGT GCAGACCTAC
GGCAAATACG TGGAACTGAC GTCGACCGTG ATTTTCGGCG GCGTCGGCAT GAACCCGCAG
ATCAGCCGCG TCAAAAAAGG CGTCGACATT CTGGTGGCCA CCCCGGGTCG CCTGCTGGAC
CTGCTGCAAC AAGGCGTGCT GGATTTGAGT CAGGTGCAAA TCCTGGTACT CGACGAGGCC
GACCGTATGC TCGACATGGG CTTTATCCAT GACGTCAAAA AAGTGCTGGC CGTGGTCCCC
AAAGACAAAC AGAGCCTGCT GTTCTCGGCC ACCTTCAGTG AAGAAATTCG TGAGCTCGCC
GCCACACTGC TCAAAAGCCC ACTCACCATC CAGGTCACGC CGCGCAACAC GACCGTGCAG
CGCATCACGC AGCTGATTCA CCCGGTCGGT CGCGGCAAAA AGAAAGCGCT ACTGGCGCAC
ATCGTTCAAG AGCGTAACTG GAGCCAGGTG CTGGTGTTCA CCCGCACCAA ATTTGGCGCC
AACAACGTCG CCGAATTCCT GACCAAAAGC GGCATCAATG CCATGGCCCT GCACGGCAAC
AAAAGCCAGG CGGCGCGCAC CCAGGCGCTG GCCGGCTTCA AGAGCGGCGA CATTCGGGCC
CTGGTGGCGA CTGACATTGC CGCCCGCGGC ATTGACATTG ACGACCTGCC GCATGTGGTG
AACTACGACA TCCCCAACGT TTGCGAAGAC TATGTGCACC GCATTGGCCG CACCGGGCGT
GCGGGCGCTG ACGGTGCTGC CGTCAACCTG GTGTGCCTGG ACGAAGAAGG CTTCATGCAG
GCGATTGAGC GCTTTACCAA GCAGGACATT GAAGTCCAGA TCGTAGAAGG CTTCATGCCG
GAGCCCGGCG AACAGGCTGA ACCGATCGCC ATGGGTCGCC AGACCATTTG GGGTGGCGCA
GGCAAGCCGC CCAGCCGCGA TGTCATGCAG GCAGCGGCCA GAACGGCACG CACCGAGATG
CTGCAACGGG TGCGCGAGAA CAAGGGCCCG CAGGGTGAGC GCGGTGGCCG CGCCGGTGCG
GGTCGGGGTG GCAACGGCGG CGGACAGCGC TCGGCGGCAC CACGCAGCCA CGCCTCGGCG
GGCGAACAGG CCGCACGTGG CCCCGGCCAA CGCCCCGCAC AAGGGCGCGC TGGCAATGCG
GGTGGGTATC CAGGTGGCAA TGGCGGTGGC AATAGTGGTG CTTACGGCGG CGGCAACTCG
GCACCCTCGC GGTCGCCGTC GAGCCAGCCC GACCCCATGC GTACCAGCGT CGACATGATG
GCTGAACGTG GTGCCCGCCG TGGTGGCGGT GGTTTCGGTG GCGGCAACCG TACGGGAGGT
TCTTATGCGG GATCAGGTGG GCGCTCCGGC GGCGCGGGTG GCTTTGGTGG CGGGGGCAAC
GGGTCTCGTG GGCCGGGCAG TTCTCGCGGC TCTTTTAACC GATAA
|
|---|
| Protein sequence | MKFEELNLAP AIIKAVLEQG YETPTPIQAQ AIPAVLDGHD LLGGAQTGTG KTAAFVLPML
HKLSQSEAAR NKFGGIGIRA LVLTPTRELA AQVEESVQTY GKYVELTSTV IFGGVGMNPQ
ISRVKKGVDI LVATPGRLLD LLQQGVLDLS QVQILVLDEA DRMLDMGFIH DVKKVLAVVP
KDKQSLLFSA TFSEEIRELA ATLLKSPLTI QVTPRNTTVQ RITQLIHPVG RGKKKALLAH
IVQERNWSQV LVFTRTKFGA NNVAEFLTKS GINAMALHGN KSQAARTQAL AGFKSGDIRA
LVATDIAARG IDIDDLPHVV NYDIPNVCED YVHRIGRTGR AGADGAAVNL VCLDEEGFMQ
AIERFTKQDI EVQIVEGFMP EPGEQAEPIA MGRQTIWGGA GKPPSRDVMQ AAARTARTEM
LQRVRENKGP QGERGGRAGA GRGGNGGGQR SAAPRSHASA GEQAARGPGQ RPAQGRAGNA
GGYPGGNGGG NSGAYGGGNS APSRSPSSQP DPMRTSVDMM AERGARRGGG GFGGGNRTGG
SYAGSGGRSG GAGGFGGGGN GSRGPGSSRG SFNR
|
|---|
| |