| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2162 |
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| Symbol | |
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| ID | 3961213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2355355 |
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| End bp | 2357232 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916982 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_523417 |
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| Protein GI | 89900946 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.750455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGCG ATCACGACAT CTATCTCTTC CGTGAGGGAA CACACGCGAA GCTGTACAAC
AAGCTGGGCT GCCACTTGCA GTCCAACGGC GGCGCGAACT TCGCAGTCTG GGCACCAAAC
GCTGAATCCG TCTCTGTCGT CGGCGACTGG AATTACTGGT CCGGCAATGT GGATCGCCTT
GATCTGCGCG ACGACGGCTC CGGCATCTGG CAGGGTTTCG TCGAGAACGC GGTTCGCGGT
CAGGGCTACA AGTACCGCAT TCAGTCAAGT CATGGCAGCT ATGGCGTGGA CAAGGCGGAC
CCGTTCGCGT TCTATGCGGA ACCACCCCCC GCAACGGCCT CGCGCGTCTG GAGCCTTGAA
CACGATTGGA AAGACGATCA GTGGATGTCA TCGCGCGGTC CAAAGAACGC GCTCGATGCA
CCGATGTCCA TCTATGAGAT CCATCTTGGC TCCTGGCGGC GCCAGGACGG ACACTTCCTC
GACTACCGCG AACTTGCGCA TTCGCTGGCC GACTATGTGA TCGAGATGGG CTTCACCCAT
GTTGAGCTGA TGCCGGTGAC CGAGCATCCG TTTTATGGCT CATGGGGCTA CCAGACAACC
GGGTACTTCG CACCTACCTC GCGCTTCGGC ACACCGCAGG ACTTCATGCA CTTCGTCGAT
CACTTGCACC AGCGCGGAAT CGGTGTGTTG CTGGACTGGG TGCCCTCGCA TTTTCCGACG
GATGAGCACG GGCTTGGCTA TTTCGACGGC ACCCATCTGT TCGAACATTC CGATCCGCGG
CAGGGCTTCC ACCCCGAATG GAACTCGAGC ATCTTCAACT ACGGGCGCAA TGAAGTGCGC
AGTTTCCTGA TTTCATCGGG GCTGTTCTGG TTGGACAAGT ACCACCTGGA CGGCCTGCGG
GTGGACGGCG TCGCCTCCAT GCTCTACCTT GACTACGCCC GCAAGGAGGA CGAGTGGATT
CCAAACCGCC ATGGTGGGCG AGAAAACCTG GAAGCCGTCG ATTTCTTGCA GACACTGAAC
AAGGCTGTTT ACCGTGAGTA TCCCGACACG CTGACCATCG CCGAGGAGTC AACCGCCTGG
CCGCGCGTGT CGCGGCCGAC CGACATGGAC GGGCTGGGTT TTGGCATGAA GTGGAATATG
GGCTGGATGC ACGACAGCCT GGCGTACATG CAGCAAGAGC CGGTCCACCG CAAATACCAC
CATCACAAGC TGACCTTCTC GCTGGTGTAT GCCTTCAACG AGAATTTTGT CCTGCCGCTA
TCACACGACG AGGTGGTGCA TGGCAAGGGA TCGCTCTTGG GCAAGATGCC CGGCGACGCC
TGGCAGCAGT TTGCAAACCT GCGTGCGCTG TTCGGCTACA TGTGGGCGCA TCCTGGCAAG
AAGCTGCTCT TCATGGGCGG AGAGTTCGGC CAACGGCGTG AATGGACCCA CGACGGCGAG
CTGGAATGGT GGGTCACAAA GCTGGAGGGC CATGCCGGGC TACAACGCTA CGTGGCGCAG
CTTAACCGCG TGTACCGCAG CCTGCCAGCC CTCTACCAGT TGGATTTTTC TCCCGCCGGG
TTTGAATGGG TGGAGGCCGA CGCGGCTGAC ACCAGCGTTT TTGCCTTCCT GCGCAAGCCG
CGTGAACATG GAGCACCGGT GCTGATCGTC AGCAATATGA CGCCGGTGCC ACGCACCAAT
TACATGCTCG GCGTGCCATT GGCCGGTTTC TGGCGTGAGG TGATCAACAG CGACGCCAGC
GAATTTGGTG GCTCGGGTTG GGGCAACTTG GGCGGGGTCG AAGCATCTCC CGTGCGATTC
CACGGCCGAC CCCATTCGGT GTGCCTGACT TTGCCACCAC TGTCCACACT CATCTTTGAA
CACGTGCCCC ATGCCTAA
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| Protein sequence | MKSDHDIYLF REGTHAKLYN KLGCHLQSNG GANFAVWAPN AESVSVVGDW NYWSGNVDRL
DLRDDGSGIW QGFVENAVRG QGYKYRIQSS HGSYGVDKAD PFAFYAEPPP ATASRVWSLE
HDWKDDQWMS SRGPKNALDA PMSIYEIHLG SWRRQDGHFL DYRELAHSLA DYVIEMGFTH
VELMPVTEHP FYGSWGYQTT GYFAPTSRFG TPQDFMHFVD HLHQRGIGVL LDWVPSHFPT
DEHGLGYFDG THLFEHSDPR QGFHPEWNSS IFNYGRNEVR SFLISSGLFW LDKYHLDGLR
VDGVASMLYL DYARKEDEWI PNRHGGRENL EAVDFLQTLN KAVYREYPDT LTIAEESTAW
PRVSRPTDMD GLGFGMKWNM GWMHDSLAYM QQEPVHRKYH HHKLTFSLVY AFNENFVLPL
SHDEVVHGKG SLLGKMPGDA WQQFANLRAL FGYMWAHPGK KLLFMGGEFG QRREWTHDGE
LEWWVTKLEG HAGLQRYVAQ LNRVYRSLPA LYQLDFSPAG FEWVEADAAD TSVFAFLRKP
REHGAPVLIV SNMTPVPRTN YMLGVPLAGF WREVINSDAS EFGGSGWGNL GGVEASPVRF
HGRPHSVCLT LPPLSTLIFE HVPHA
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