| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2161 |
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| Symbol | |
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| ID | 3961212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2353320 |
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| End bp | 2355362 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916981 |
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| Product | alpha amylase |
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| Protein accession | YP_523416 |
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| Protein GI | 89900945 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAT CCGCCACAGC CCAGACACCC TTGCCTTGCG CCTCGGTCGA GGACGGGCGC
ATTCGCGCCG TGATTGACGC CGTTCTTCCC AATGTGGACG GTGGCCGCTT CGCGGTGAAA
CGGGTGGCGG GTGAGAGCAT GGTGGTCACG GCCCATTGCT TCACCGATGG CCACGACGTG
TTGCGCGTGG TGCTGCGCTG GCGCAAGGAA GAGCAGGCCG AAGTGCACGA AGTCCCCATG
AAGCCGCTAG GCAACGACGT CTGGTCCGCC GAGTTCACAC CCACTGCGGT CGGACACTAT
CGTTACTCGG TCACCGCCTG GGTAGATCCG TTCGAGTCGT GGCGCTACGA GATGACGCGC
CGCACCGATG TTGACGACAT CCGCATGGCG TCGCAGGTAG GCGCGCTTGA GATCGCTGCA
GCGGCACAGC GCGCGCGCGG CAGAGACTGC AAGACGCTGT CCAACTGGGC CAGGGATCTA
AAGGCAGCAG CAAGCGACCG TACGGTCGAC CCGACACTCC TCAAGGCACT GGCGCTGGAT
GAGGCTCTAG CTCAATTGGC GGCACGTTAT CCCGACCGCA GTCTGGCTGC AAACTCCGAT
CAGGAGTTGC CGCTGGTCGC GGACCGCGCA CGCGCGCGCT TCAGCACCTG GTACGAGTTA
TTTCCTCGCT CTGCCGCGCC TGAGCCTGGC CGACACGGCA CTTTCAAAGA TGTGGAGGCC
CGCCTGCCTG TGATCGCAGC GATGGGGTTC GATGTTCTGT ACTTCCCACC GATCCATCCC
ATCGGACTGG TGCAGCGCAA GGGCAAAAAC AATGCACTGA CCAGTGAGCC TGGTGATGTC
GGCAGTCCCT GGGCGATCGG TGCCATCGAG GGTGGCCACA AGTCGATCCT GCCGACACTG
GGTGCACCGG AAGATTTCAG GCACCTGGTG GCCAGGGCCG CGGATTTTGG GATCGAGATC
GCACTCGATA TCGCCTTTCA GTGCGCGCCC GACCACCCCT ACGTCAAGGC GCACCCGAGC
TGGTTCCGCT GGCGCCCTGA CGGCAGCGTG CAGTGTGCCG AGAACCCACC GAAGAAATAC
CAGGATATCT ACCCGTTCAA TTTCGAAAGT GAAGATTGGC GCGGCTTGTG GGCGGAGCTC
AAAAGCGTGT TCGACTACTG GATTCTTGAA GGTGTGAAAA TCTTCCGCGT GGATAACCCG
CATACCAAGG CCTTCCCGTT CTGGGAGTGG GCCATCTGCG AAATCAAGCG CAAGCACCCC
GATGTTCTCT TCCTGGCCGA AGCCTTCACC CGGCCAAAGG TCATGCACCG GCTGGCCAAA
CTCGGCTTCA CACAGTCGTA CACCTATTTC ACCTGGCGCA ACAATAAACA GGAATTGACC
AATTATTTCA AGGAGCTTTC AGGCGGTCCG GGTGTTGACT ACTTCCGCCC CAATGTCTGG
CCGAACACAC CGGACATCCT GCACGAACAG CTGCAAAGCG GCGAGCCCGC CATGTACATG
ACCCGTCTGG TTCTTGCCGC TACATTGGCG GCGAGTTATG GTATCTACGG CCCGGCCTAT
GAGTTGCGCG AGCATTTGCC GAAGTCGCCC GGCAGTGAGG AGTATCTCAA CTCGGAAAAA
TATCAACTGC GCAACTGGAA CAATAATGAT CCAGATAGCC TTGCACCCTT CATTACCCGA
ATCAATCAGA TCCGTCACGA CAACGCCGCG CTTCATGCGG ACCACAGCCT GCGCTTCCTG
CCCATCGACA ACGACCAGCT TCTGGCCTAC TCGAAAACCT CGGATGACGG CAACAACGTG
GTGGTCACGG TGGTCAATCT TGACCCCCAC AATGTCCAGT CAGGCATGGT TCATTTGGAC
CCCGAATCGA TCGGAGTGGA TGCCTCGCAT CCGTTTCAGA TGCACGACCT GCTAAGCAAC
CAGCGCTTTG TGTGGCAAGG CCGGCATCAC TATATCCGTC TCGACCCGCA CAGCGCGCCA
GCACACGTCT TCGTCGTGCG CCGGCACGTC CGCGATGAAC GCGACTTCGA TTACTATTTT
TGA
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| Protein sequence | MPKSATAQTP LPCASVEDGR IRAVIDAVLP NVDGGRFAVK RVAGESMVVT AHCFTDGHDV
LRVVLRWRKE EQAEVHEVPM KPLGNDVWSA EFTPTAVGHY RYSVTAWVDP FESWRYEMTR
RTDVDDIRMA SQVGALEIAA AAQRARGRDC KTLSNWARDL KAAASDRTVD PTLLKALALD
EALAQLAARY PDRSLAANSD QELPLVADRA RARFSTWYEL FPRSAAPEPG RHGTFKDVEA
RLPVIAAMGF DVLYFPPIHP IGLVQRKGKN NALTSEPGDV GSPWAIGAIE GGHKSILPTL
GAPEDFRHLV ARAADFGIEI ALDIAFQCAP DHPYVKAHPS WFRWRPDGSV QCAENPPKKY
QDIYPFNFES EDWRGLWAEL KSVFDYWILE GVKIFRVDNP HTKAFPFWEW AICEIKRKHP
DVLFLAEAFT RPKVMHRLAK LGFTQSYTYF TWRNNKQELT NYFKELSGGP GVDYFRPNVW
PNTPDILHEQ LQSGEPAMYM TRLVLAATLA ASYGIYGPAY ELREHLPKSP GSEEYLNSEK
YQLRNWNNND PDSLAPFITR INQIRHDNAA LHADHSLRFL PIDNDQLLAY SKTSDDGNNV
VVTVVNLDPH NVQSGMVHLD PESIGVDASH PFQMHDLLSN QRFVWQGRHH YIRLDPHSAP
AHVFVVRRHV RDERDFDYYF
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