| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2158 |
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| Symbol | |
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| ID | 3961209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2347090 |
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| End bp | 2349249 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916978 |
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| Product | glycogen debranching protein GlgX |
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| Protein accession | YP_523413 |
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| Protein GI | 89900942 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0345133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAA ATGAGTTAAT CACGGCAGTT TGGCCTGGGC ACGCCTATCC GCGCGGCGCC
CACTGGGACG GTGAGGGCGT CAATTTCGCG CTGTTCTCGC AACATGCCGA GAAAGTAGAG
TTGTGTCTGT TCAACGAGAC CGGTCGTCAC GAACGTCAAC GCATCGAGAT TCGCGAACGC
ACCGACGACA TCTGGCACTG CTACCTGCCC GAGGCCCGCC CGGGTCTGGC CTACGGCTAC
CGCGTGCACG GCCCCTACAA ACCCGAAGAG GGCCACCGCT TCAACCCCAA CAAGTTGTTG
GTTGATCCCT ATGCCAAAGA CCTCATCGGC CAATTGCGAT GGGGCGATGC GCTCTATGGC
TACACCATCG GCAGCAAACG CGAGGACCTC TCGTTCGACC GCCGCGACAG TGCACCACTG
GTGCCCAAGA GCCGCGTGGT CGAGCCCGCT TTCACATGGG GCGACGACCG CCGGCCCACG
GTACCGTGGC AGGACATGGT CATCTATGAG TTGCACGTGC GCGGCTTCAC CATGACCCAT
CCGGAGGTGC CAGCGCAGTT GCGCGGCACC TACGCGGGGC TCGGCTGTGC CCCGGTGGTC
GACTACCTGA AACGCCTGGG GGTCACCACG ATTGAATTGC TGCCCGTACA TAGCTACGTC
AGTGAACGCC ACCTGGCCAT CAAGGGGCTT TCAAACTACT GGGGCTACAA CACCCTGGGT
TTCTTCGCCC CAGAGAGGCG CTACAGCGCC TCGGGCAATG TCAAGGAATT CAAGACCTTG
GTGAAGACGC TGCACTCAGC CGGCATCGAG GTGATCATTG ACGTGGTCTA CAACCACACC
TGCGAAGGCA ATCAGCTTGG GCCCACGCTC TCCCTGCGCG GCATCGACAA CGCGTCCTAC
TACATCGCCA ACGCCAGCAA CCACCGGTAT TACGACGACT TCAGCGGTTG TGGCAACACC
GTCAACATTG AGCACCCGCG AACGCTTCAG TGGATGATGG ACTCTTTGCG CTACTGGGTT
GAAGAAATGC ATGTCGACGG TTTTCGCTTC GACCTTGCTT CTGCGCTGGC GCGCGAAGCC
GGTGAGGTAG AGAACCTGGG CGGTTTTTTC GATGCCATCC GCCAGGACCC GACGCTCAAC
CGCGTCAAGC TGATCGCCGA GCCCTGGGAC TTGGGAAGCG GTGGTTATCG GGTTGGCAAC
TTCCCGCACG GCTGGGCCGA GTGGAACGAT CGCTACCGTA ACGGCATGCG CGCCTACTGG
AAAGGTGACG ACGGGCAGAT CGGTGAGCTT GCACAGCGCC TCACCGGCTC GCATGACCTC
TACGGCTGGT CGGGCAAACG CAGCCACGCC AGCATCAACT TCGTCACGGC GCACGACGGC
TTCACGCTGC ACGACCTGGT CTCCTACAAC GACAAGCACA ACGAGGCCAA TGGCGAAGAT
AACCGCGACG GCAACAGCCA CAACCTATCC TGGAACTGCG GCGCCGAGGG CGAGAGTGAC
AACCCCGCTA TTCGGGCGCT GCGGGAGCGG CAGAAGCGCA ACCTGTTGGC CACGTTGCTG
CTGTCACAAG GCTTGCCCAT GCTGCTGGCT GGTGACGAAC GCGGCCACAC GCAACTGGGC
AACAACAACG TCTACTGTCA GGACAACCAG CTGGCCTGGC TGGACTGGAC CCCGAGTCCG
GAGCGCGATG CTTTGCATAC TTTTGTGCAG CGCTTGATCA AACTGCGCCG GGAGCACCCG
TCTCTGCGTC GGCGCAACTT CTTCGAAGGT AAGCCGCAGG ATGGCGACAC GGACAAGGAT
GTGTGCTGGC TGAAACCCGA CGGCGGCGAG ATGATGGGGC AGGATTGGAG CGACAACCAA
GCACGATGCC TGGCGATGCT GGTGTCGGGC AGTGGCATTT CGGAGCGCGG CGCACATGGC
GAAACACTGC ACGACGATGA CTTTCTGCTG CTCCTGAACA GCCACCATGC CGAGATACCC
TTTGCCCTGC CGCCGGTGCG CGGGGGCGAA TGGCTGCTGC TGCTTGACAC CGCGACCCAG
ACCATTCCAC CGGCCGACAA CGGTCTGCCG CTCGCTTCGC CGCCAGCGTG GGGGCAGGCG
AGTTATCCGC TGCAATCTCG CTCCCTGGTA CTGCTGACCC GCGCCAGGAC GCTTGTATGA
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| Protein sequence | MKTNELITAV WPGHAYPRGA HWDGEGVNFA LFSQHAEKVE LCLFNETGRH ERQRIEIRER
TDDIWHCYLP EARPGLAYGY RVHGPYKPEE GHRFNPNKLL VDPYAKDLIG QLRWGDALYG
YTIGSKREDL SFDRRDSAPL VPKSRVVEPA FTWGDDRRPT VPWQDMVIYE LHVRGFTMTH
PEVPAQLRGT YAGLGCAPVV DYLKRLGVTT IELLPVHSYV SERHLAIKGL SNYWGYNTLG
FFAPERRYSA SGNVKEFKTL VKTLHSAGIE VIIDVVYNHT CEGNQLGPTL SLRGIDNASY
YIANASNHRY YDDFSGCGNT VNIEHPRTLQ WMMDSLRYWV EEMHVDGFRF DLASALAREA
GEVENLGGFF DAIRQDPTLN RVKLIAEPWD LGSGGYRVGN FPHGWAEWND RYRNGMRAYW
KGDDGQIGEL AQRLTGSHDL YGWSGKRSHA SINFVTAHDG FTLHDLVSYN DKHNEANGED
NRDGNSHNLS WNCGAEGESD NPAIRALRER QKRNLLATLL LSQGLPMLLA GDERGHTQLG
NNNVYCQDNQ LAWLDWTPSP ERDALHTFVQ RLIKLRREHP SLRRRNFFEG KPQDGDTDKD
VCWLKPDGGE MMGQDWSDNQ ARCLAMLVSG SGISERGAHG ETLHDDDFLL LLNSHHAEIP
FALPPVRGGE WLLLLDTATQ TIPPADNGLP LASPPAWGQA SYPLQSRSLV LLTRARTLV
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