Gene Rfer_2137 details

Gene Information

• Locus tag: Rfer_2137
• ID: 3962089
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2318133
• End bp: 2319956
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637916957
• Product: GTP-binding protein TypA
• Protein accession: YP_523392
• Protein GI: 89900921
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.011912
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCATA AGCAAATCCG AAACATCGCC ATCATCGCTC ACGTCGATCA TGGCAAGACC 
ACCATGGTCG ACCAATTGCT GCGCCAGTCT GGCACCTTTG CCGAGCACGA GAAGGTGGTT 
GACACCGTGA TGGACAACAA CGCCATCGAA AAAGAGCGTG GCATCACGAT CCTGGCCAAG 
AACTGCGCCG TGACCTGGCA AGGCACACAC ATCAACATCG TTGACACCCC CGGTCACGCC 
GACTTCGGCG GCGAGGTGGA ACGCGCATTG AGCATGGTCG ACGGCGTGGT GCTGCTAATC 
GATGCGCAAG AAGGCCCCAT GCCCCAAACG CGTTTTGTGA CCAAAAAGGC CCTGGCCTTG 
GGACTCAAGC CAATCCTGGT GGTGAACAAG GTGGACAAGC CCGGTGCGCG CCCCCAATGG 
GTGGTCAACG CCGCGTTTGA TTTGTTCGAC AAGCTCGGCG CCACGGATGA ACAGCTGGAT 
TTTCCCGTGG TCTATGCCTC CGGCATCAAC GGCTGGTCGT CGCTGGAAGA GGGCGGTCAG 
GGTGAACAGT GGGGTCCCGA CATGTCGGCC CTGTTCAATA CCATTCTCAA GCATGTGCCG 
CACCAACAGG GTGACCCTGC AGCGCCACTG CAACTGCAAA TTTCGGCGCT CGACTTTTCG 
ACCTTTGTGG GCCGGATTGG TGTCGGGCGC ATCAGCCAGG GCACGATCAG GCCCATGATG 
GACGTGGTCG TGATGGAAGG TCCGGATGGC AAGGCCGTCA AAGGTCGTGT CAACCAGGTG 
TTGACCTTCC AGGGCCTGGA GCGCGTGCAG ACCACGGATG CCGGTCCAGG CGAAATCGTG 
CTGATCAACG GCCTGGCTGA CATCGGCATT GGCGTGACCA TCACCGATCC CGTCAATCCG 
GCACCGCTGC CCATGCTCAA GGTGGACGAA CCGACCCTGA CCATGAACTT CTGCGTCAAC 
ACCAGCCCGC TGGCGGGCCG TGAGGGCAAG TACGTCACCA GCCGCCAGAT TTGGGATCGT 
CTGCAAAAAG AACTGCAACA CAACGTGGCC TTGCGCGTGA AAGAAACCGA TGAAGAAGGT 
ATCTTTGAAG TCATGGGTCG CGGCGAACTG CACTTGACCA TTCTGCTGGA AAACATGCGG 
CGCGAAGGTT TTGAGTTGGC AGTCAGCAAG CCGCGCGTGG TGCTCAAGGA GGTCAATGGC 
GAAAAGTATG AGCCGATCGA GCTGGTGACC ATCGACGTCG AGGAGCAGCA CCAGGGTGGT 
GTGATGCAAG CCTTGGGCGA GCGCAAGGGC GACCTGATCA ACATGGAACC CGATGGCCGT 
GGCCGGGTCC GTTTGGAATA CCGCATTCCG GCGCGTGGTC TGATTGGTTT TACCAATGAA 
TTCTTGAACC TGACGCGCGG CTCGGGCCTG ATCTCCAACA TTTTTGACAG CTATGAGCCC 
CACAGGGGTG ACATCGGCGG GCGCAAAAAT GGCGTACTGA TCTCCATGGA TGCGGGTGAA 
ATCTTCAACT ACGCGCTGGG CAAACTCGAT GACCGCGGCC GTATGTTTGT CACGGCCAAT 
GACCCGGTAT ACGAAGGCAT GATTGTGGGC ATCCACAACC GTGACAACGA TCTGGTGGTC 
AACGCCACGC GCACCAAACA GCTGACCAAC TTCCGCGTCA GTGGCAAGGA AGATGCGATC 
AAGATCACCC CGCCGATTCA ATTGACGCTG GAATACGGCG TGGAATTCAT TGAAGACGAC 
GAACTGGTCG AAATCACGCC CAAGTCGATT CGCCTGCGCA AGCGTTATCT GACTGAGAGC 
GAGCGCAAGC GGGCGGGTCG CTAA 

 

Protein sequence

MSHKQIRNIA IIAHVDHGKT TMVDQLLRQS GTFAEHEKVV DTVMDNNAIE KERGITILAK 
NCAVTWQGTH INIVDTPGHA DFGGEVERAL SMVDGVVLLI DAQEGPMPQT RFVTKKALAL 
GLKPILVVNK VDKPGARPQW VVNAAFDLFD KLGATDEQLD FPVVYASGIN GWSSLEEGGQ 
GEQWGPDMSA LFNTILKHVP HQQGDPAAPL QLQISALDFS TFVGRIGVGR ISQGTIRPMM 
DVVVMEGPDG KAVKGRVNQV LTFQGLERVQ TTDAGPGEIV LINGLADIGI GVTITDPVNP 
APLPMLKVDE PTLTMNFCVN TSPLAGREGK YVTSRQIWDR LQKELQHNVA LRVKETDEEG 
IFEVMGRGEL HLTILLENMR REGFELAVSK PRVVLKEVNG EKYEPIELVT IDVEEQHQGG 
VMQALGERKG DLINMEPDGR GRVRLEYRIP ARGLIGFTNE FLNLTRGSGL ISNIFDSYEP 
HRGDIGGRKN GVLISMDAGE IFNYALGKLD DRGRMFVTAN DPVYEGMIVG IHNRDNDLVV 
NATRTKQLTN FRVSGKEDAI KITPPIQLTL EYGVEFIEDD ELVEITPKSI RLRKRYLTES 
ERKRAGR