| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2097 |
|---|
| Symbol | |
|---|
| ID | 3961263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2271011 |
|---|
| End bp | 2271904 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916916 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_523352 |
|---|
| Protein GI | 89900881 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.143233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCT CAACCAGCCA AATTACGGGC AGCATCGTGG CGCTTGTCAC CCCCATGCTT
GATGATGGCA GCGTGGACTA CCCCGCCCTG CGCAAACTCA TCGACTGGCA TATCGCGGAA
GGCACCGACT GCATTGGCGT GGTGGGCACC ACCGGTGAAT CGCCCACAGT CAACGTGCAG
GAGCACTGCG AAATCATCCG CGTCGCGGTT GAGCAGGCCG CAGGACGCGT GCCAATCATG
GCCGGCTGCG GCGCCAACTG CACGGCCGAG GCGATCGAAC TGACCCAATT TGCCAAAAAA
GTCGGCGCAG ATTGCCAGCT GCAAGTAGTG CCCTATTACA ACAAGCCAAC CCAGGAGGGT
CAGTACCGGC ACTTCAAAGC GATTGCAGAA GCAGTTGATC TGCCAATGGT TCTCTATAAC
GTTCCCGGTC GTGCCGTGGC AGACATGGCA CACGATACCG TGCTGCGCCT GGCTCAGGTG
CCTGGTATCG TTGGCATCAA GGAAGCCACC GGCCAAATTG ATCGGGCGCA ATGGTTGATC
CGCGAAGCGC CCAAGGGCTT TGCCATTTAC TCCGGCGATG ACCCAACGGC GGTTGCCCTG
ATGTTGTGTG GTGGCCATGG CAACGTTAGC GTCACGGCCA ATATTGCACC CCGACTGATG
CACGAGCTGT GCGTGGCCGC GATGGCCGGT GACACAAAAC GCGCCATGGA AATTCAGTTC
AAATTACTGC CTTTGCACAA AAATCTGTTT ATTGAGGCCA ACCCGATCCC CGTCAAGTGG
GCGGTGGCGC GGCTTAAGCT GTGCGGCGGT ACCCTGCGTC TGCCCATGAC ACCTTTGACC
CCAGCCAACG AAGCGGCGCT TGAGAGCGCT TTGCACGCCA GCGGTTTGCT CTGA
|
|---|
| Protein sequence | MTSSTSQITG SIVALVTPML DDGSVDYPAL RKLIDWHIAE GTDCIGVVGT TGESPTVNVQ
EHCEIIRVAV EQAAGRVPIM AGCGANCTAE AIELTQFAKK VGADCQLQVV PYYNKPTQEG
QYRHFKAIAE AVDLPMVLYN VPGRAVADMA HDTVLRLAQV PGIVGIKEAT GQIDRAQWLI
REAPKGFAIY SGDDPTAVAL MLCGGHGNVS VTANIAPRLM HELCVAAMAG DTKRAMEIQF
KLLPLHKNLF IEANPIPVKW AVARLKLCGG TLRLPMTPLT PANEAALESA LHASGLL
|
|---|
| |