| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2068 |
|---|
| Symbol | |
|---|
| ID | 3961019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2241691 |
|---|
| End bp | 2242767 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637916888 |
|---|
| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
|---|
| Protein accession | YP_523324 |
|---|
| Protein GI | 89900853 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
|---|
| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA ACTTGCGGGT ATTGGGCATT GAGTCCTCGT GTGATGAAAC GGGCGTGGCG
CTGGTGGAGG TGCGGGGCAG TGTATTGCCG GTGCTTCTGG CCGATGCCTT GTACAGCCAG
ATCGAGATGC ACCAGGCCTA CGGTGGCGTG GTGCCCGAAC TGGCCAGTCG CGACCACATT
CGCCGCGTGC TGCCGCTGAC GGAGCAGGTG CTTGCGGCAT CCGGTCGAAC CTTGGCAGAC
ATTGATGTGG TGGCGTTCAC GCGCGGCCCG GGTCTGGCCG GGGCCTTGCT GGTGGGCGCG
GGGGTGGCGT GCGCGCTGGG CGCGGCCCTG GGTAAACCGG TGTTGGGTGT GCATCACCTG
GAAGGGCATT TGCTGTCACC ATTCTTGAGT GCTGATCCGC CCGAATTCCC CTTCGTGGCG
CTGCTGGTGT CGGGCGGCCA CACGCAGTTG ATGCGGGTGG ACGGGGTCGG GCGTTACGAA
TTGCTGGGCG AGACGATTGA TGATGCCGCC GGCGAGGCGT TTGACAAGTC AGCCAAGCTG
CTGGGGCTGG CTTATCCGGG AGGGCCGGCA CTGTCGAGAC TGGCCGAGCA GGGTGATGCC
ACGGCGTTCA AGTTGCCTCG TCCCTTGCTG AAAAGCGGCA ATCTTGATTT TTCATTTGCC
GGCTTGAAAA CGGCGGTGAT GGTGCAGGCC AAAAAGCTGG CTGCCGCGCA GGACGGGTCG
GTCGAGGCCT TGCCGGTGCA GGTACTGGCT GACCTGGCGG CCTCGACCCA GGCCGCCATT
GTCGAAGTGC TGGTCAAGAA GTCGATGACG GCTTTGAGTC AAACCAGTCT CAAACGTCTG
GTGGTGGCCG GCGGTGTGGG CGCCAACCGC AGCTTGCGCG CGCAGCTCAA TGCGGAGTGT
GGCAAGCGCG GCGTGCGGGT GCATTACCCG GAACTGCATC TGTGTACCGA CAACGGCGCC
ATGATTGCCA TGGCGGCTGC CATGCGCCTG CAGTCCGGCC AGCAGGCAGC CAGCGAGGTC
TATGCTTTTG ACGTCAGACC GCGCTGGCCG CTGGGCGATC TGACAGCGTC GGCGTGA
|
|---|
| Protein sequence | MAKNLRVLGI ESSCDETGVA LVEVRGSVLP VLLADALYSQ IEMHQAYGGV VPELASRDHI
RRVLPLTEQV LAASGRTLAD IDVVAFTRGP GLAGALLVGA GVACALGAAL GKPVLGVHHL
EGHLLSPFLS ADPPEFPFVA LLVSGGHTQL MRVDGVGRYE LLGETIDDAA GEAFDKSAKL
LGLAYPGGPA LSRLAEQGDA TAFKLPRPLL KSGNLDFSFA GLKTAVMVQA KKLAAAQDGS
VEALPVQVLA DLAASTQAAI VEVLVKKSMT ALSQTSLKRL VVAGGVGANR SLRAQLNAEC
GKRGVRVHYP ELHLCTDNGA MIAMAAAMRL QSGQQAASEV YAFDVRPRWP LGDLTASA
|
|---|
| |