Gene Rfer_2060 details

Gene Information

• Locus tag: Rfer_2060
• ID: 3962107
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2230171
• End bp: 2232021
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637916880
• Product: phosphogluconate dehydratase
• Protein accession: YP_523316
• Protein GI: 89900845
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.151005
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCA ACCAAACCGT CGAAGCCGTC ACGCAGCGCA TCCGCCAACG CAGCCAGCCC 
ACGCGCAGTG CCTACCTGGA GCGCCTGGCG CTTACCGCGC AGCGCAAACC CGGTGCGCAG 
CGGCTGGGCT GCGCGAACGT GGCGCACGCT TTTGCCGCAC TCCCCATCAA TGACAAATTC 
CGCGTGGTGG CCGAGCGAGC GCCCAATATC GGCATCGTGA ACGCCTACAA CGACATCCTG 
TCGGCCCACG CCCCGATGCA GCATTACCCT GAAATCATCA AGGTGGAAGC CCGCAGGCTG 
GGTGCCACCG CCCAGGTGGC TGGCGGCGTG CCGGCGATGT GCGACGGCGT GACGCAAGGC 
ACGCCGGGCA TGGAACTCAG TCTGTTTTCG CGCGACGTGA TCGCCATGGC CACCGCGGTC 
TCCCTGAGCC ATGACGTGTT CGATGCCGCG CTGATGATCG GCGTGTGCGA CAAGATCGTG 
CCCGGCCTGC TGATCGGCGC GCTGCATTTT GGCCATTTGC CGACCGTGTT TGTGCCGGCC 
GGCCCCATGA CCTCGGGTCT GTCGAACAAC GAAAAATCGA AGGTGCGCGA GAAAGCCGCC 
CAAGGTCTGG TCGGGCGCCC CGAGTTGCTG GAAGCCGAAT CCAAGGCCTA TCACGGCGCG 
GGCACCTGCA CCTTCTACGG CACCGCCAAC AGCAACCAGA TGCTGCTCGA AGCCATGGGC 
CTGCATGTGC CGGGCACCGC TTTTGTCAAC CCGGGCAATA CGATCCGCGA CGAGCTGACG 
CGCGAAGCCG TGCGCACCGT GCTCGACATC ACCAAGGCGC GTCGGTTTGC GCCGATTGGC 
GAAGTGGTGG ACGAGCGCTG CATCGTCAAC GCCATGGTGG CCTTGCTGGC CACTGGCGGC 
TCCACCAACC ACCTGATTCA CTGGGTGGCG GTGGCCCGCG CGGCCGGCAT CGTGATTGAC 
TGGGATGATT TCTCCGAACT GTCGGAAGTG GTGCCCTTGT TGACACGGGT CTACCCCAAC 
GGCAGCGCGG ACGTGAACCA GTTCCAGGCC GCCGGTGGAC CCGGTTTTGT GATTCGTGAG 
TTGCTGGATG CGGGGCTGAT GCACGCCGAT GTGTTGACGG TGCGCGCCGG CGGTCTGCGG 
GAATACACCG GCATCCCCGC CGGCACACCG GACGGGCAAG GGGCGCTGCA TTGGGTCGAT 
GCCGGTGCCA GCAAAGACGA CAGCGTGGTG CGGCCGGCCA GTGCGCCCTT CAGCCCGCAC 
GGCGGCCTCA TGTTGCTCAA AGGCAATCTG GGGCGCAGTG TGATCAAGGT CTCGGCCGTG 
CCGGACGACC GCCATGTGGT GGAAGCCCCG TGCCGGGTGT TTGACTCGCA GGAAGCTTTG 
CATGCAGCCT TCGGCGCAGG GGAGCTGGAC CGCATGTGCC TGGAAAACGC CGCCGGCGGC 
GTGGTGTGTG TGGTGCGCTG GCAGGGTCCG CACGCCAACG GCATGCCCGA GCTACACAAG 
CTCACGCCGC CGCTGGCCGT GTTGCAGGGC AAAGGCTTCA AGGTGGCGCT GGTCACCGAC 
GGGCGCATGA GTGGCGCCTC GGGCAAAGTG CCGGCCGCCA TTCACGTCTC GCCCGAAGCC 
GCCGCCGGCG GTCCGCTGGC CAAGGTGCGC GACGGCGATG TGATTCGCCT GGACGCCACG 
ACGGGCACGC TGGAGGTGCT GGTTGCTGCC GACGCGTGGG CCGCCCGCAC GCTGGACGAC 
ATGCCCGAAG CCCTGCGGCA CGCGAATGGC ATTGGCATGG GGCGTGAGCT TTTTGCCGGC 
ATGCGGCGCA ATGCCCTGAG CGCCGAGCAT GGTGCTTGCA CCTGGTCTTG A 

 

Protein sequence

MKLNQTVEAV TQRIRQRSQP TRSAYLERLA LTAQRKPGAQ RLGCANVAHA FAALPINDKF 
RVVAERAPNI GIVNAYNDIL SAHAPMQHYP EIIKVEARRL GATAQVAGGV PAMCDGVTQG 
TPGMELSLFS RDVIAMATAV SLSHDVFDAA LMIGVCDKIV PGLLIGALHF GHLPTVFVPA 
GPMTSGLSNN EKSKVREKAA QGLVGRPELL EAESKAYHGA GTCTFYGTAN SNQMLLEAMG 
LHVPGTAFVN PGNTIRDELT REAVRTVLDI TKARRFAPIG EVVDERCIVN AMVALLATGG 
STNHLIHWVA VARAAGIVID WDDFSELSEV VPLLTRVYPN GSADVNQFQA AGGPGFVIRE 
LLDAGLMHAD VLTVRAGGLR EYTGIPAGTP DGQGALHWVD AGASKDDSVV RPASAPFSPH 
GGLMLLKGNL GRSVIKVSAV PDDRHVVEAP CRVFDSQEAL HAAFGAGELD RMCLENAAGG 
VVCVVRWQGP HANGMPELHK LTPPLAVLQG KGFKVALVTD GRMSGASGKV PAAIHVSPEA 
AAGGPLAKVR DGDVIRLDAT TGTLEVLVAA DAWAARTLDD MPEALRHANG IGMGRELFAG 
MRRNALSAEH GACTWS