| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2055 |
|---|
| Symbol | |
|---|
| ID | 3962102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2223282 |
|---|
| End bp | 2226386 |
|---|
| Gene Length | 3105 bp |
|---|
| Protein Length | 1034 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916875 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_523311 |
|---|
| Protein GI | 89900840 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCA GCCCGAGACC GGGTGCGCCA CACCAACAAC GCGGGCCACA CGCTTTGCTA
CCTGAAGCCA TGCCATTTAT TCGTCAACGC ATCGGCGCAC TAGTCAGGCT CAATCACCAT
GTGCCGATCT GGTTGCTGGC CGCGTTGGTG TTTGCCGCAG TCTGGCTGCA TACTTTTCGT
CTGATCAACG ATGACCGCGC CAAAGCCATG GGCGGCGCAG AAAACGAAAT AGTCAATCTG
GCGCGGATTG GCCAGGAACA TGCCGAACGC ATCTTTTACA GCGTTGACCA GACCTTGCGC
CTGGTTCGTT CTGAATATCA GGAACATTCA GGTGGTCTTG ACCTTGGCAC GATGCGTGTC
GAGGGGGTTT TTGATGAGAG AACCATTCGT CAGGTCAGTA TCGTTGACGC GTCGGGGATT
CTTCGGTTGA GCAGCCTGCC TCTGAGCGAT CATCGTGATG TGTCGGATCG GGACTACTTC
AAGGCCCAGC GCGAAGCTGC CAGCGACACG CTTTTCATCT CAAAGCCCGA GTTCGATCTG
GCTTATGGGG TGTGGTCGGT CCGGGTTTCG CGTCGGATCG TGGGCAATGA CGGAGAATTT
GCTGGTGTGG TTGTCGTGTC GCTCGATCCC ACCTATTTCA CCCGTTTTTA CGGCGAACTC
CAGCTCGGTC ATGAGGGTGT CGCGGCGCTG TATGGATTGA CCGGATCCTT GCTCGCCCGC
AAGACCGCGC ATACGGAGAC ATTCACTGGC AATGCCGTGT CGAGCCCGGT CTTTGCACGT
ATTGCCCGCG GCGATACCAG CGGCACGCTG ACCTTTCAAG CCCAGACCGA CGGTATCGAA
CGCCTTTACC ACTTCAAACA ATTGGCTTCT TACCCGGTAC TGGTATTGGT CGGGCTGGCC
AGCAAGGACG TGTTTGCCCA GCAAGAGGAC ACCCTGCAGC ATCGCGTATG GGAAGCCGTC
ATCCTGAGTG TTCTCCTGCT CGTTCTTGGC GTGCTTCTAT CCTGGTATGT GGTCATCAGG
CGGCGCCATT CGACGGCGCA GCGGCAAGCC CTGGTGCAGT TGCAAAGCCT CACCCACCAT
GTGCCGGGGG TGGTATTTCA GTACCTGCTG CGCCCCGATG GCAGTTCCTG CTTCCCTTTT
GCCAGTGCTG GCCTGCACAA AATCTTTCGG CTCAGTCCTG AAGCTGTTGC GCAGGATGCT
GCGCCGCTTT TTGCCTTGAT GCACCCAGAT GATGCGGCTG GTGTGGCGGC ATCGATCCAG
GCCTCATCCC GTGCGTTGAC GCCTTGGGTC GATGAGTATC GCGTGAAGTT TGGGGATGGC
ACGGTGCGCT GGCTGTCGAG CAAGGCCGCG CCGCAAAAAC TCGATGACGG TTCGGTCTTA
TGGCACGGTT TCGTGTCCGA TGTCACGGCG CACAAACAGG CAGAAGAGTC CTTGATCACC
TTGTCGGCGG CGGTCGAACA ATCGCCGGTT TCCATCGTCA TCAGCGACCC CCGGGGGCTC
ATTGAATACG TCAATCCGAT GTTCGAGCAG GTCAGTGGTT ACCGGCGTGC CGAGGTCATG
GGGCAGAACC CCCGCATTTT GTCGTCGCAC GAAAAGTCAG AGGATGAGTA CCGCGAGATG
TGGGCCACAT TGCTGGCGGG AGACATCTGG CATGGTGAGT TTCACAGCCG CCGCAAGGAT
GGCTCGCTGT TCTGGGAGCA GGCAGCGATT GCCCCTATTT TTGACGATCA CGGCAGGCCG
ATTCATTACC TGGCGATCAA GGAAGACATC ACCAAGCGCA AGGCGGCCGA GGCCGAAATC
GAGCATCTGG CTTTTTATGA CTTGCTCACC GGGCTGCCTA ATCGGCGCCT GCTGAACGAC
CGGCTGCAAC AGGTGCTGGC GGTCGGCACG CGCAGCCGTC GCCATGGCGC CTTGCTGTTC
ATTGATCTGG ACAATTTTAA AAACCTGAAC GACACCCAGG GTCATGAGCA GGGTGATGTG
TTGTTGCAGC AAGTGGCCCA GCGGCTCAAC TTTTGTGTGC GTGAATGCGA CACGGTGGCG
AGGCTGGGGG GTGATGATTT TGTTGTGATG CTGCAGGATC TGAGCGAGCA GCAGACTGAG
GCGGCCACGC AGGCCGAAGG CGTGGGCCAG AAGATCCTTG ATGCTTTGCA CCAGCCTTAC
CCTTTTGGCC ACTTTACGCA CCACGGTAGT GCCAGTGTGG GTGTGGCGCT GTTCAACGCC
AGCCAGGACA CGGTCGAAGA GCTACTCAAA CGGGCTGACC TGGCGCTGTA CCAGGCCAAG
GATGCCGGGC GCAACACGCT GCGCTTTTTT GACCCCGACA TGCAGGCGGT CATCAGTGCG
CGCGCCGAGA TGGAGGCGGA TATGCGCCTT GGCCTGCAGG AAAACCAGTT CCTGCTTTAT
TACCAGCCGC AGGTGAACCA CGCGGGCCGT CTGATCGGTG TTGAGGCGTT GGTGCGCTGG
CAGCATCCAC TGCGTGGCTT GGTGGCGCCA GCGCACTTCA TTCCCTTGGC TGAAGATACC
GGCCTGATCC TGCCCTTGGG CCAATGGGTC ATGGAGGCCG CTTGCCGCCA ATTGCAGCTC
TGGCGGACAC AAGCACATAC TGCGCAGTTG ACGATCGCGG TGAACGTCAG CGCGTTGCAG
TTTCACGGTG AGAGTTTTGT GTCGGATGTA CTGGCAACGC TGGCGCGCAC CGGGGCCCCG
GCGGACCGGC TCAAGCTGGA GCTGACCGAG AGCCTGCTGG TCAAGGACGT TGATGGCGTC
ATCGCCAAGA TGGTGGCACT CAAGGCTCAC GGCGTCGGAT TTTCGCTCGA TGATTTTGGT
ACCGGCTATT CATCGTTGTC CTATCTCAAA CGCTTGCCGC TGGACCAGAT CAAGATTGAC
CAGTCGTTTG TGAGCGATGC CTTGAGCAAC CCGAAAGACG CTGCATTGGT CCGGGCCACC
GTGGCGATGG GGCGCGGCCT TGGCATGATG GTGATTGCCG AAGGCGTGGA GACCCAGATG
CAGCGTGATT TTCTGGAGGG CGAGGGCTGC CTCAATTTCC AGGGCTATTT CTTTGGTCGC
CCGGTTCCGG TCGCCGAGCT GGCGTGTTTT TTAGTCGCTG AATAA
|
|---|
| Protein sequence | MPSSPRPGAP HQQRGPHALL PEAMPFIRQR IGALVRLNHH VPIWLLAALV FAAVWLHTFR
LINDDRAKAM GGAENEIVNL ARIGQEHAER IFYSVDQTLR LVRSEYQEHS GGLDLGTMRV
EGVFDERTIR QVSIVDASGI LRLSSLPLSD HRDVSDRDYF KAQREAASDT LFISKPEFDL
AYGVWSVRVS RRIVGNDGEF AGVVVVSLDP TYFTRFYGEL QLGHEGVAAL YGLTGSLLAR
KTAHTETFTG NAVSSPVFAR IARGDTSGTL TFQAQTDGIE RLYHFKQLAS YPVLVLVGLA
SKDVFAQQED TLQHRVWEAV ILSVLLLVLG VLLSWYVVIR RRHSTAQRQA LVQLQSLTHH
VPGVVFQYLL RPDGSSCFPF ASAGLHKIFR LSPEAVAQDA APLFALMHPD DAAGVAASIQ
ASSRALTPWV DEYRVKFGDG TVRWLSSKAA PQKLDDGSVL WHGFVSDVTA HKQAEESLIT
LSAAVEQSPV SIVISDPRGL IEYVNPMFEQ VSGYRRAEVM GQNPRILSSH EKSEDEYREM
WATLLAGDIW HGEFHSRRKD GSLFWEQAAI APIFDDHGRP IHYLAIKEDI TKRKAAEAEI
EHLAFYDLLT GLPNRRLLND RLQQVLAVGT RSRRHGALLF IDLDNFKNLN DTQGHEQGDV
LLQQVAQRLN FCVRECDTVA RLGGDDFVVM LQDLSEQQTE AATQAEGVGQ KILDALHQPY
PFGHFTHHGS ASVGVALFNA SQDTVEELLK RADLALYQAK DAGRNTLRFF DPDMQAVISA
RAEMEADMRL GLQENQFLLY YQPQVNHAGR LIGVEALVRW QHPLRGLVAP AHFIPLAEDT
GLILPLGQWV MEAACRQLQL WRTQAHTAQL TIAVNVSALQ FHGESFVSDV LATLARTGAP
ADRLKLELTE SLLVKDVDGV IAKMVALKAH GVGFSLDDFG TGYSSLSYLK RLPLDQIKID
QSFVSDALSN PKDAALVRAT VAMGRGLGMM VIAEGVETQM QRDFLEGEGC LNFQGYFFGR
PVPVAELACF LVAE
|
|---|
| |