| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2040 |
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| Symbol | |
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| ID | 3963178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2204468 |
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| End bp | 2208025 |
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| Gene Length | 3558 bp |
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| Protein Length | 1185 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916860 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_523296 |
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| Protein GI | 89900825 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.918185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTATCC ACCTTCGTTT GCACACTGAA TTTTCCGTCG TTGACGGCAC CAACCGTATT
GGCGACAGCG TCAAGGCCGC GGCCGCTGAT GGCCAGCCGG CTTTGGCCAT TACCGACCTG
AGCAATCTGT TTGGCGCCAT CAAGTTTTAC AAGGCGGCGC GCAAGTGCGG CGTCAAGCCG
CTGATTGGCG CCGAAATCTG GCTCGAAGGG CTGGGCCAGG ATGCCAGCGC GCTGTCGCGG
CTGCTGCTGC TGGTGCAAAA CAAGCAGGGT TACCTCAATT TGTCGGAGTT GCTGGCGCGC
GCCTGGACGC AGCAGGGCAA CAAGGCGCAG GCCAGCGTCA AGCTGGACTG GCTGAAAGAG
CTGGGCGAGG GCTTGATCGT CTTGTCCGGC GCCCAGGCCG GGCCGGTGGG GCAGGCGCTG
CTGCAGGGCG ATGTGGCGCG CGCGCTGGAC GCTGCACTGC AGTTGGCGGG CGTATTTACC
CATCGGTTTT ACCTGGAGTT GCAGCGCGCC GGTCGCCCCG ACGATGAGGC GCATGTCGTG
GCCACGGTGC AATTGGCCGC GCGCGCTGGT TTGCCGGTGG TGGCGACGCA CCCGATTCAG
TTTGCCGGGC CGGATGATTT TGAAGCGCAT GAGGCGCGCG TGTGTATTGC CGACGGTGAA
ATTTTGAGCA ACCCACGCCG GGTGCGCCGC TTCACGCGCG AGCAGTATTT CAAGTCCAGC
GCGCAGATGC AGGCGCTGTT TGCCGACGTG CCTTCGGCAC TCGCCAACAC GCTGGAGATT
GCCAGGCGTT GCAACCTGAC CCTGGTGCTG GACAAACCGC AGCTGCCTGA CTTTCCGACG
CCCGAGGTCA ACGGCCAGCG CATGACGCCG GATGATTACT TTCGCTATGC CTCGCACGAG
GGCCTGAAAG AGCGCATGGC CCATCTGTAC CCGGATGCGG CGCAGCGCGG CCAAGAGATG
CCGCGCTACC TGGCACGGCT TGAATTTGAG CTCAATACCA TCGTGAAGAT GGGTTTTCCG
GGCTATTTTT TGATTGTGGG CGACTTCATC AACTGGGCCA AAAACAACGG TTGCCCGGTC
GGGCCGGGAC GGGGCTCCGG CGCGGGGTCG CTGGTGGCCT ACTCGCTCAA AATCACCGAC
CTGGACCCCT TGCGCTACAA CCTGCTGTTT GAGCGCTTTT TGAACCCGGA ACGGGTTTCG
ATGCCCGACT TTGACATCGA CTTTTGTCAG ACCAACCGCA ACCTGGTGAT TGACTACGTC
AAGAGCAAAT ACGGCAAGGA CGCCGTCAGC CAGATCGTCA CTTTCGGCAC CATGGCCGCG
CGCGCTGCGG TGCGCGACGT GGGACGTGTG CTGGACATGA GCTACACCTT TTGCGATGGC
ATCAGCAAGC TGATCCCGAA CAAGCCGGGC GTCAGCGTGA GCCTGCAGTT GCCGCCACCG
GATCGAAAGA AAGACGACAA AACCGTCTAT GCCGTCGAGG CCGAGCCGCT GCTGGCTGAG
CGCGAGGCCA AGGAAGAAGA CGTCAAGACC CTGCTGGAAC TGGCGCGCAA GTTAGAGGGC
TTGACGCGCA ACGTCGGCAT GCACGCCGGC GGTGTGCTGA TCGCACCGGG CAAGCTGACC
GACTTTTGTC CGCTTTATCA GCAGCCCGGT AGTGACTCGG CGGTGAGTCA GTTTGACAAA
TACGACGTGG AAGCCATTGG CCTGGTCAAG TTCGACTTTT TGGGCCTGGC CACACTCACC
ATTCTGGAGA TTGCGCGCGA CTTCATCATC GAGCGTCACC GGGGCCAGGA AAACTTTGCC
TTTGAGAACC TGCCGCTGGA CGACATGCGG GTCTACAAGC TGTTTCAGGA GGGCAAGACC
GAGGCCGTGT TCCAGTTTGA ATCGCGCGGC ATGCAGGGCA TGTTGAAAGA CGCCAAGCCG
ACCCGCCTGG AAGACCTGAT TGCGCTCAAC GCCCTGTACC GGCCCGGCCC GATGGACCTG
ATCCCCAGCT TTGTGGCGCG CAAGCATGGC CGCGAGGTGG TCGAGTACCC GCACCCGCTG
GTGGCCGAGA TGCTGAGCGA GACCTACGGC ATCATGGTCT ACCAGGAGCA GGTGATGCAG
ACGGCACAGA TTCTGGGCGG CTATTCGCTC GGTGGCGCTG ACATGCTGCG CCGCGCCATG
GGCAAGAAAG ACGCCGATGA AATGGCCCGC CAGCGCCAGA TCTTCCGCGA CGGTGCGGCC
AAAAACAACA TCAATCAAGC CAAGGCCGAC GAGGTATTTG ACTTGATGGA AAAATTTGCC
GGCTATGGCT TCAACAAGTC GCACGCGGCC GCCTATTCAC TGTTGGCCTA CCACACGGCA
TGGCTCAAGG TGCACTACAC GGCCGAGTTC TTTTGCGCCA ACATGACGGT GGAAATGGAC
GACACCGACA AGCTCAAGGT CTTGTACGAA GACGCTTTGA AAATGGGCTT GACGTTTGAG
CCGCCCGATG TGAACCGGGG TGGCAGCCGC TTTGAGCCGA TCTCCGACAA GGTCATTCGC
TATGGCCTGA GCGCCATCAA GGGCAGTGGC CAGCAAGCGA TTGAGGCGAT TGTGGCGGCG
CGCGAAGGCC GTGGTGTCGG GCCCTCGGGC GATGTGGCGG GGCCGTTCAA AAGTCTGTTC
GATTTTTGCG TGCGGGTGGA CCGTTCGCGC GTCAACAAGC GCACGGTCGA GGCGCTGATC
AAGGCCGGTG CGTTTGATGC CATCCAGCTC AACCGCGCCA GCCTGCTGGC CTCGACCGAC
CTGGCGTTCG AGTTTGGCGC CGCCGCACTG GCCAACGCCA ACCAGGGCGG TTTGTTCGAC
ATGGACGATG ACGCGCAAGG GTCGAGCACG CAAGAGCCGG AGCTGGTGCA GGCTGTGCCG
TGGGGTGTGA AAGAGCGCCT GACGTTCGAG AAAACCGCCG TCGGCTTTTA TTTGTCGGGC
CATCTGTTTG ACGAGGTGGC TTTGGAAGTG CGCCGCTTTG CCAAGCGTCA GATCGACGAC
CTGATTGACA TCCGCGAGCC GCAGTTGCTG GCCGGCATCA TCACTGATTT TCGGGTCATC
AACGGCCAGC GCGGCAAGCT GGCGCTGTTC AAGCTCGACG ATAAATCGGG TGTGATCGAG
GCACGAGCCG ATGAAGCGCT GATCAACGCG CACAAGAATT TGCTCAAGGA CGACGAACTG
GTGATCGTCA TGGGCCAGTT GAAACCGGAC CGTTTTTCAG GCGGTATGCA GCTCACGGTG
ACGCAGATTT GGGATTTGGA GCAGGCGCGC TGCCGCTTTG GCAAGTTTTT GCGGCTGGTG
GTGAGCACGC AGCCCGGCCA GGCGCCCGAT ATCGCCCGCA TGGCCCGGGA CTACCCGCCG
CTGCGCGAAG TCACCGAGCA GGGCGAGCTG CTGCGCGGCC TGGGCGTGCG GCTGTCGGTG
ACCTGCCAGG GGGAGGGCGT TCGGGCTGCG GCGGAGTTGC AACTGGGGGA ACGTGCCAAG
TTTTACCCCA GCAACGCGGC GCTGGCGGGC TGGCGGGTGC AGGCGGGGGC GGGGAAGTCT
GACATTGTTT ATGAGTGA
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| Protein sequence | MFIHLRLHTE FSVVDGTNRI GDSVKAAAAD GQPALAITDL SNLFGAIKFY KAARKCGVKP
LIGAEIWLEG LGQDASALSR LLLLVQNKQG YLNLSELLAR AWTQQGNKAQ ASVKLDWLKE
LGEGLIVLSG AQAGPVGQAL LQGDVARALD AALQLAGVFT HRFYLELQRA GRPDDEAHVV
ATVQLAARAG LPVVATHPIQ FAGPDDFEAH EARVCIADGE ILSNPRRVRR FTREQYFKSS
AQMQALFADV PSALANTLEI ARRCNLTLVL DKPQLPDFPT PEVNGQRMTP DDYFRYASHE
GLKERMAHLY PDAAQRGQEM PRYLARLEFE LNTIVKMGFP GYFLIVGDFI NWAKNNGCPV
GPGRGSGAGS LVAYSLKITD LDPLRYNLLF ERFLNPERVS MPDFDIDFCQ TNRNLVIDYV
KSKYGKDAVS QIVTFGTMAA RAAVRDVGRV LDMSYTFCDG ISKLIPNKPG VSVSLQLPPP
DRKKDDKTVY AVEAEPLLAE REAKEEDVKT LLELARKLEG LTRNVGMHAG GVLIAPGKLT
DFCPLYQQPG SDSAVSQFDK YDVEAIGLVK FDFLGLATLT ILEIARDFII ERHRGQENFA
FENLPLDDMR VYKLFQEGKT EAVFQFESRG MQGMLKDAKP TRLEDLIALN ALYRPGPMDL
IPSFVARKHG REVVEYPHPL VAEMLSETYG IMVYQEQVMQ TAQILGGYSL GGADMLRRAM
GKKDADEMAR QRQIFRDGAA KNNINQAKAD EVFDLMEKFA GYGFNKSHAA AYSLLAYHTA
WLKVHYTAEF FCANMTVEMD DTDKLKVLYE DALKMGLTFE PPDVNRGGSR FEPISDKVIR
YGLSAIKGSG QQAIEAIVAA REGRGVGPSG DVAGPFKSLF DFCVRVDRSR VNKRTVEALI
KAGAFDAIQL NRASLLASTD LAFEFGAAAL ANANQGGLFD MDDDAQGSST QEPELVQAVP
WGVKERLTFE KTAVGFYLSG HLFDEVALEV RRFAKRQIDD LIDIREPQLL AGIITDFRVI
NGQRGKLALF KLDDKSGVIE ARADEALINA HKNLLKDDEL VIVMGQLKPD RFSGGMQLTV
TQIWDLEQAR CRFGKFLRLV VSTQPGQAPD IARMARDYPP LREVTEQGEL LRGLGVRLSV
TCQGEGVRAA AELQLGERAK FYPSNAALAG WRVQAGAGKS DIVYE
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