Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2016 |
Symbol | |
ID | 3961764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2172542 |
End bp | 2175166 |
Gene Length | 2625 bp |
Protein Length | 874 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637916836 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_523272 |
Protein GI | 89900801 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAATG CAGCCCGCCA GCACCGCACG CGCCAATGGA TTTTGGCGAC GAGCGTCTTT GTTTTCAGCG CGGTGGCCAT CGCTGTTTTA ATCTGGCGCT GGGAACAGCA GACACTTATA GAAGTCCGCG CGCGAGCAGC TGATCTGACC GCAGATCACG CACACACCCT GCAACGCGAT ATCGAGCGGG CCTTGTCTGC AACCTATGCA ATTGCCGCGC TGGTTCGCCA GGGCCAGGGA AACATCGCTG ATTTCGAAGC GGTCGCCACT GAAATGCTGC CGTTTTATCC GGGCGTTGCC GCATTGGGAA TGGCTCCCGA CGGCATTATT CGAAACGTGG TGCCTCTTGC TGGCAATGAA AAAAGTATTG GCTTTAACCA GTTGAAGGAC AACACCCAGA ACCAAGAGGC GCTCATGGCC CGTGACACCG GCAGGCTGAC ACTGGCGGGA CCCCTCAAGC TTGCGCAAGG TGGCCTGGGA GTTGTGGGGC GTCTGCCCGT CTTTCTGAAC GATGCGCAGG GACACAAGGT GTTTTGGGGC TTCACTTACG TAACCTTGCG GTTTCCGGAT GCTCTGGCCT CTGCCCGCCT GCCTCTTTTG ACGCAACGCG GTTATGCCTA CGAGCTTTGG CGCACCGCAC CGGACACCGG CGAGCGACAA AGCATTGAGG CGTCTGGAAA CGGTGTGCTC GATGCACCGG TAGAGCGCAC GCTGGAACTG CCCAACGGCC AGTGGACACT GAGTGTCGCG CCGATCAACG GCTGGGGCCA ATCAGACCGT CTCGGGTTCG AGGCCACCAT CAACTTTTTT CTCAGCCTGT TGATGGCCTA TCTCGCCTGG TTACTGTATG AGATGAGGGT GCGTGACCAG GGATTGGAAG TGCAGGTGAA CGAGCGCACG GCTGAAATTC TGGCGACGCA GCGACAGCTT CAAGCCACGC TGGGCGCGAT TCCGGACCCG CTGCTTGAGT TGGGACTGGA CGGGCGCTGT TACAACGCAC ACTCGTCCCG GACTGACTCA CTGCCATGGC CGACCGAGGA CCTGATCGGC AGAACGATCA TGGAATTGCT GCCGCCGCAG GCCTGCCAGA TCGTGCTGGC GGCCTTGCAG GAAGCCAAAG AAAAAGAATG TTCAATCGGC AAACAAATCA AAGTGCCGCT TGACAATGGC ATGCACTGGT TTGAAATGTC GGTGACGCGA AAATCAGCGT TGCCTGGCGA AGAACCCCTC TTTTTGGTTT TATGCCGCGA CATCACCGAA AGCAAGCAGG CAGAGAGAAA AATCCAGTTG CTGGCACATT TTGATTCACT CACAGGCCTG CCCAATCGGG TGTTGTTGAC CGACCGCTGC AACCTGGCAC TTAGCGCCGC GCAGCGCAAT GGCACACCGC TGGCGCTGTT GCTCCTGGAC CTGGATCATT TCAAGAACGT CAACGACTCG CTCGGACACC GGGTAGGCGA CGAAGTGCTG ATTGCGCTAG CGGGTCGGCT CAAAGGCGCC GTGCGTGAGC AGGACACAGT TTGCCGTCTG GGTGGTGATG AGTTCATTTT GGTACTTCCC GAAACAAATG CTGCGGGTGC TGCACATATC GCCGAAATGT TGCTGCAATC GGCATTGGTG GCATTTGAGC TCGAACCGCA TGAGTTGACG GTGACACCCA GCATCGGGAT TGCCTTGTTT CCTGGCGATG GCTCGGACTT CGACACGCTG TCACGTTGCG CCGATGCCGC GATGTACCGC GCTAAAAAAG ACGGGCGCAA CAACTACCGC TTCTTCACGG CAGAAATGCA GGCTCGCTCT GAACGCACCC TGACGCTGGA AAATGCGCTG CGCCGTGCTT TGGAGCGCAA TCAGCTGCAG TTGCACTACC AGCCGCAAAT TTCGCTGGCG AGTGGCCGTG TCGTTGGCGC AGAAGCCTTG CTGCGATGGA GTCACCCCGA ACTGGGGGCT GTGCCGCCGG CTGAATTCAT TCCCGTGGCC GAGACCTGCG GACTGATTTT GCCCATCGGC GAATGGGTCC TGCGTACCTC CGTGCAGCAG CTCAAGGCAT GGATTGACGC CGGGATGCTG CCCATTGCTC TCTCTGTCAA TCTGTCATCG GTGCAGTTCC GCCATGCCGA CCTACCTGAA CTGGTAACCA GCATTCTGAA TGAAGCCCAG TTGCCCGCCC ATTTGCTGGA ACTCGAACTG ACCGAAAACG TTGCCATGAC CGACCCGCTG GGGGCCATTG CCGTCATGAA CAATTTGCAC GAGCGCGGCG TACGCATGTC GATTGATGAC TTTGGCACGG GTTACTCGTC GCTGAGCTAC CTGAAAAAGT TTCGGGTCTA CAAAATCAAG ATCGATCAGT CTTTTGTGCG TGACATCACC GAAGACTCCG ACGACAAGGC GATTGTGGGC GCCATCATCA GCATGGCGAC AAGCCTGGGC ATGCAAACCA TTGCCGAAGG GGTAGAAACC GAGGGGCAGC TTGAATTTTT GAAGGCCAAG GGCTGCACCG AAGTGCAAGG CTACTATTTC AGCCGACCGC TGCCGGTTGA ACAGTTTGAG GCGTTCATGG GGACAAAATC ATCTTCAAAC CAGCCGTTTG TTCCCGCTCA GTCCGCAATT GACATAAGGC TCTGA
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Protein sequence | MMNAARQHRT RQWILATSVF VFSAVAIAVL IWRWEQQTLI EVRARAADLT ADHAHTLQRD IERALSATYA IAALVRQGQG NIADFEAVAT EMLPFYPGVA ALGMAPDGII RNVVPLAGNE KSIGFNQLKD NTQNQEALMA RDTGRLTLAG PLKLAQGGLG VVGRLPVFLN DAQGHKVFWG FTYVTLRFPD ALASARLPLL TQRGYAYELW RTAPDTGERQ SIEASGNGVL DAPVERTLEL PNGQWTLSVA PINGWGQSDR LGFEATINFF LSLLMAYLAW LLYEMRVRDQ GLEVQVNERT AEILATQRQL QATLGAIPDP LLELGLDGRC YNAHSSRTDS LPWPTEDLIG RTIMELLPPQ ACQIVLAALQ EAKEKECSIG KQIKVPLDNG MHWFEMSVTR KSALPGEEPL FLVLCRDITE SKQAERKIQL LAHFDSLTGL PNRVLLTDRC NLALSAAQRN GTPLALLLLD LDHFKNVNDS LGHRVGDEVL IALAGRLKGA VREQDTVCRL GGDEFILVLP ETNAAGAAHI AEMLLQSALV AFELEPHELT VTPSIGIALF PGDGSDFDTL SRCADAAMYR AKKDGRNNYR FFTAEMQARS ERTLTLENAL RRALERNQLQ LHYQPQISLA SGRVVGAEAL LRWSHPELGA VPPAEFIPVA ETCGLILPIG EWVLRTSVQQ LKAWIDAGML PIALSVNLSS VQFRHADLPE LVTSILNEAQ LPAHLLELEL TENVAMTDPL GAIAVMNNLH ERGVRMSIDD FGTGYSSLSY LKKFRVYKIK IDQSFVRDIT EDSDDKAIVG AIISMATSLG MQTIAEGVET EGQLEFLKAK GCTEVQGYYF SRPLPVEQFE AFMGTKSSSN QPFVPAQSAI DIRL
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