Gene Rfer_1998 details

Gene Information

• Locus tag: Rfer_1998
• Symbol: lpxD
• ID: 3962222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2154582
• End bp: 2155571
• Gene Length: 990 bp
• Protein Length: 329 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637916818
• Product: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• Protein accession: YP_523254
• Protein GI: 89900783
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• TIGRFAM ID: [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0072677
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACGCTGC TTCTAGGTTC GATTGTCGAA TTGCTTGGCG GAGATTTGCA GGGCGATGCA 
AGTCTCAAAA TCGAGGGCTT GGCGCCACTT GAAAGCGCAA CGCCACAACA GTTGAGTTTT 
CTCAGCCACC CCAAGTACCA GAACCAATTG GCGGCCTCCA GAGCCGCTTG TGTCATCGTC 
AGCCCGGAAA TGCGAGGAGT GGCGCTGGCG CGCGGGGCTT GCATCGTGAC CGAGCAACCT 
TATCTGTACT TTGCCCGTGT CACGCAACTC TGGAAAAAGA GTCTGCCGCG GACGGTACGG 
CCGCAGATTC ACCCGAGCGC TGTGATTGAC CCTGAGGCTT TTGTGCACCC GCGCGCCTGC 
ATTGGCGCCC TGTGCGTGAT TGAGAGTGGC GCCAGCGTGG GTGCCGATAC GGTGCTCAAG 
TCGCGCGTGA CGGTGGGTGA AAACTGTGTC ATCGGCGAGC GTTGTCTGCT GCATTCAGGC 
GTTGTGATCG GTGCCGATGG TTTTGGTTTT GCGCCCCATG CAGGGGCGTG GGAAAAAATT 
GAACAACTCG GTGCGGTTCG CATCGGCAAC GACGTTGAAA TTGGCGCCAA TACCTGCATT 
GACCGCGGCG CCTTGCAAGA CACGGTGATT GAAGACGGCG TCAAGCTCGA CAACTTGATA 
CAGATCGGCC ACAACGTACA CGTTGGAAAA CATACCGCGA TGGCCGGTTG CGCCGGTGTG 
GCTGGCAGCG CCACCATTGG CGCTCATTGC ACCCTGGGCG GCGGTGCCAT TGTGCTGGGA 
CATCTGACGC TGGCCGATGG TGTCAACATC TCGGCGGCCA CAGTGGTCAC CCGCTCGCTT 
CGCAAGCCCG GTCACTACAC GGGCATGTTC CCGATTGATG ACAATGCCGC CTGGGAAAAA 
AATGCTGCGT CACTGAAACA ACTGCACAGT TTGCGCGACC GCATTCGGGC GCTGGAAGAT 
AAACTAATGA CTTTGCGGGA CAGACCGTAG 

 

Protein sequence

MTLLLGSIVE LLGGDLQGDA SLKIEGLAPL ESATPQQLSF LSHPKYQNQL AASRAACVIV 
SPEMRGVALA RGACIVTEQP YLYFARVTQL WKKSLPRTVR PQIHPSAVID PEAFVHPRAC 
IGALCVIESG ASVGADTVLK SRVTVGENCV IGERCLLHSG VVIGADGFGF APHAGAWEKI 
EQLGAVRIGN DVEIGANTCI DRGALQDTVI EDGVKLDNLI QIGHNVHVGK HTAMAGCAGV 
AGSATIGAHC TLGGGAIVLG HLTLADGVNI SAATVVTRSL RKPGHYTGMF PIDDNAAWEK 
NAASLKQLHS LRDRIRALED KLMTLRDRP