Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1983 |
Symbol | |
ID | 3964339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2134593 |
End bp | 2138654 |
Gene Length | 4062 bp |
Protein Length | 1353 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637916803 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_523239 |
Protein GI | 89900768 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.103002 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTGA ATATCTTTCA GTCACACTCG CTCAAGGCCC GCGTGACCCT CTTTTCGCTG ACAATTTTTG TGCTCAGTAT CTGGGCGCTG GCGCTGTTTG CCAGTCGCAT GTTGCGCGCG GACATGCAGC AGCAATTGGG GGACCAGCAA CTGGCGAGCG TGACTGGGGT GGCGGCAGGG ATCAGTCACA AATTGGAAGA ACGTTTGGTA GCACTGGATC AGGTGGCCGA ACGCATGGAT CCGGCCCTGC TGCGTCATGA CGCCGCACTG CAAGAATTCC TGGAGGCACA GCCGGTTTTT CGCGGTCTAT TCAATGCCGG CGTCATCGTC ACCACGCTGG ACGGCACGGT CAGCCACGCG GTGCCGTTCG CCAAGGAACG GATCGGCGTT ACTACCCTGG CGATCGGGGC GATTGCCGCC GCGCTGCGGC AGGGGCGCAC AACGGTCGGT CAGCCGGTGA TGGACAAGGC GCTGCCAGCG CCACTGATCA CCATGGCGGC GCCCATTCGC AATCCACAGG GCCAGGTGAT CGGGGCTCTG GCTGGCATGA TCAATCTAAC ATTGCCTAAT CTGCTGGACC CGATCAGCCA GGGCCGTTAT GGCAAGACTG GCAGCTATCT GCTGGTTGCG CGACCAGCCC GGATGGTGAT CACCAACACC GACAAAAAAC GGGTCATGGA GGCAGCGCCT GCGCCCGGCG TCAACCGCCT GATTGACCGC TTCATGCAGG GTTATGAGGG TTCCGCAATT TTCGTTGACC CCTTTGAGGT GGAAACACTG ACCTCGGCCA AGGGCATCAC GCTGGCCGAT TGGTACGTGG CGGCGGCATT GCCCACCGCC GAAGCCTTTG CACCCATCGA CGCCATGCAG CGGCGTATTG TGCTGGCCAC CGTGCTGCTG ACCCTGCTGG CGGGCGGCCT GACATGGTGG ATGCTGCGCC GGCAACTGGC GCCGCTGCTC GCCACCGCCG AAACCTTGGT GGCCCTGCCC ACAGCCCAGA CATTTCCGAT CGCGCTGCCC GTCGCTCACC CGGACGAAAT TGGCCACTTG ATTGATGGCT TCAATCACCT GCTGGCTCAC CTGCACCAGC GTGAGACCCT GCTCAAGCAG ATTCTTGACA CCTCCAGCGC CGCCATCTTT GTCATCGACT CACAGGGCCG CATCACGCAA GCCAACCAGC GCATGGCCGA GATGTTCGGT TGCCCGCTCG ACACCCTGAT CGGGCATGAC TACGTCAGCC TGGTGCACCC GGCGGAGCGC AATGTCGGAC AACAGAACAT GCTGGCTTTG CTGGCCAACA AAGTCTCGTC CTCCGATTTG GAGCGCCTGT ATTGGCGCGC CGACGAATCC GAATTCTGGG GCCACCTGGC GTGCCGCGGC TTCCACGACG CCAGCACCCA TCAACATTGC TTTGTCGGTG TCATTACGGA CATCACCGAA CGGATCCAGG TCGGGAAATT CGAGCAACTT CGCAGCCGCA TTCTGGAGCT TCTGGCAAGC GGTGAGCCAC TGCCCCTCAT TCTTGAAGCC CTGGTGCGCG GCGTGGAGCA ACTCAACCCC ACCATGCTGT GCAGCATCTT GCTGCTCAGC GGCGACGGCC AGCATCTGGG CCAAGGTGTG GCGCCGAGTC TGCCCGACTT TTATAACGCG GCCATCGACG GCATTGAAAT CGGCGCCGGT GCCGGCTCCT GCGGCACGTC CGCCTTTACC GCGGAGCGCG TCATCGTCAG CGACATTGCA ACCCATGTGT ATTGGCAGCG CTACAAGGAA CTCGCGGCAC GCGCCGACTT GGGCGCCTGC TGGTCGCAGC CCATTCTTTC CTCCCTGGGC CAGGTGCTGG GAACCTTTGC CAGCTACCAC CACACCACCC ACACGCCGAC GTCGGCTGAA ATTGCCTCGG TTGAGCGCTT TGCCCGGATC GCCGCCATCG TGATTGAAGG ACAAGCCGCG GCCAAAAAAA TGCGCGACAG CGAAGAACGT TTTCGCACCC TGATCGAGGA ATCACCCGCC GCGATCCTGG TCCATCGTGA GCTGCGCATC ATTTATCTCA ATCCAGCCGC CATCGCGATG TTTGGTGCCC GCACAGCGCA AGAACTGGTC GGCAAGGCCC TCCTTGATTT GATTCATCCG GATTCCCATC AAGTCGCCAC GGCGCGCGTC AGGCACATCA CCAACACCGG CCATGCGGCG CCTCTGATCG ATGAAAAATA TCTCAGGCTC GATGGCACGC CGATTGACGT GGAAGTCCAG AGCACTTCGA TTATTTACGA GGGGCTAGCG GCCATCCGGA CTGCTTTTCG CGACATCTCC GAGCGCAAAC TGGCGCACGA CAAGCTGCAA CTTGCGGCCA ACGTCTTCAG CCATGCCCGC GAGGGCATCG CCATCACCGA CGCACGCGCC ACCATCATTG ATGTCAATGA GGCTTTTTGC CGCATCACCG GCTACAGCCG GGACGAAGTG CTGGGCCAGA ACCCGCGAGT GCTGGGCTCG GGCCGCCAGG ACAAGGCGTT TTACGCCGCC ATGTGGCACG ACCTGGGCGA ACAAGGCCAT TGGTACGGTG AAATCTGGAA CCGGCGCAAA AACGGCGAGT TGTACCCCGA GATGCTCACC ATCAGCGCCG TGCGCACGGA CCAGGGCCAG GTCCAGAACT ATGTCGCGCT GTTTTCCGAC ATCAGCGCCA TCAAGGCGCA CCAACACGAG CTCGAACACA TTGCCCACTT TGACGCCCTC ACCAACTTGC CCAACCGGGT GCTGCTGGCC GACCGCTTGC AGCAAGCCAT GGCGCAGGCG CAGCGCCGTG GCCAGATGCT GGCGCTGGCC TACCTCGACC TCGACGGCTT CAAGGCCATC AACGACCGCC ATGGCCATGA AGCCGGCGAT CTGCTGCTCA TGACAGTCGC CACCCGCATG AAGCAGACCC TGCGCGAGGG CGACACGCTG GCGCGCATTG GTGGCGACGA GTTCGTGGCG GTGCTGCTCG ATCTGAGCGA CAGCAAGGCC AGCGCGCCCA TGCTCAGCCG CTTGTTGGCG GCGGCGGCCG AACCGGTGCG CCTGGGCGAT CTGGCGCTGC AAGTTTCGGC CAGCCTGGGT GTGACCTTTT ATCCGCAGGT CGATGAGATG GAAGCTGACC AGTTGCTGCG CCAGGCCGAT CAGGCCATGT ACCAGGCCAA GCTGGCGGGC AAAAACCGCT ACCACTTTTT TGACGCGGCA CAAGACCGCA GCGCGCGCGG ACATCATGAG AGCCTGGAGC GCATCCGCCA GGCGCTTGAC CGACGTGAAT TCGTGCTCTA TTACCAGCCC AAGGTCAACA TGCGCACCGG CGCCGTGATT GGTGCTGAAG CGCTGATTCG CTGGCAACAT CCCGAAAAAG GGCTGCTTGC CCCGGCCCTG TTTTTGCCCG TGATCGAGGA TCATCCGCTG GCCGTCGATA TTGGCGAGTG GGTGATCGCC ACCGCGCTGA TCCAGAACGA GCTTTGGCAG GCCGACGGGC TGGACATGCC GATTAGCGTC AACGTCGGCG CACGCCAGCT CCAGCAGGCC GACTTCGTGC CACGCCTGCG CGAGCTGCTG GCCGCACAAC CCGGGGTCAA GCCGTTTCAG CTGGAAATCG AGGTGCTGGA GACCAGTGCC CTCGAAGACT GGGTTGGCGT GTCGCAATCG ATTGAAGAAT GCCGGGAAAT GGGGGTGCTG TTTGCCCTGG ACGATTTTGG TACCGGCTAT TCGTCGCTGA CCTACCTCAA ACGTCTGCAA GTCGATCTGC TCAAGATTGA CCAGAGCTTT GTGCGCGACA TGCTCGACGA CCCCGACGAC ATGGCCATTT TGCAGGGTGT TATCGGCCTG GCCGGTGCGT TTCGGCGCAA CGTCATTGCC GAAGGTGTGG AGACCATTGC CCACGGCACC TTGCTGCTGC AACTGGGCTG CGATCTGGGG CAAGGCTTCG GCATTGCGCG GCCCATGCCC GCCGACCTCT TTCCGGCCTG GGCGGCAAGC TGGCAGCGCG ATGCAGCCTG GGTTGCCGCG GGCGGCACGG ACCACCCGTC GCTCATGGCA ACCCTTCAAT AG
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Protein sequence | MDLNIFQSHS LKARVTLFSL TIFVLSIWAL ALFASRMLRA DMQQQLGDQQ LASVTGVAAG ISHKLEERLV ALDQVAERMD PALLRHDAAL QEFLEAQPVF RGLFNAGVIV TTLDGTVSHA VPFAKERIGV TTLAIGAIAA ALRQGRTTVG QPVMDKALPA PLITMAAPIR NPQGQVIGAL AGMINLTLPN LLDPISQGRY GKTGSYLLVA RPARMVITNT DKKRVMEAAP APGVNRLIDR FMQGYEGSAI FVDPFEVETL TSAKGITLAD WYVAAALPTA EAFAPIDAMQ RRIVLATVLL TLLAGGLTWW MLRRQLAPLL ATAETLVALP TAQTFPIALP VAHPDEIGHL IDGFNHLLAH LHQRETLLKQ ILDTSSAAIF VIDSQGRITQ ANQRMAEMFG CPLDTLIGHD YVSLVHPAER NVGQQNMLAL LANKVSSSDL ERLYWRADES EFWGHLACRG FHDASTHQHC FVGVITDITE RIQVGKFEQL RSRILELLAS GEPLPLILEA LVRGVEQLNP TMLCSILLLS GDGQHLGQGV APSLPDFYNA AIDGIEIGAG AGSCGTSAFT AERVIVSDIA THVYWQRYKE LAARADLGAC WSQPILSSLG QVLGTFASYH HTTHTPTSAE IASVERFARI AAIVIEGQAA AKKMRDSEER FRTLIEESPA AILVHRELRI IYLNPAAIAM FGARTAQELV GKALLDLIHP DSHQVATARV RHITNTGHAA PLIDEKYLRL DGTPIDVEVQ STSIIYEGLA AIRTAFRDIS ERKLAHDKLQ LAANVFSHAR EGIAITDARA TIIDVNEAFC RITGYSRDEV LGQNPRVLGS GRQDKAFYAA MWHDLGEQGH WYGEIWNRRK NGELYPEMLT ISAVRTDQGQ VQNYVALFSD ISAIKAHQHE LEHIAHFDAL TNLPNRVLLA DRLQQAMAQA QRRGQMLALA YLDLDGFKAI NDRHGHEAGD LLLMTVATRM KQTLREGDTL ARIGGDEFVA VLLDLSDSKA SAPMLSRLLA AAAEPVRLGD LALQVSASLG VTFYPQVDEM EADQLLRQAD QAMYQAKLAG KNRYHFFDAA QDRSARGHHE SLERIRQALD RREFVLYYQP KVNMRTGAVI GAEALIRWQH PEKGLLAPAL FLPVIEDHPL AVDIGEWVIA TALIQNELWQ ADGLDMPISV NVGARQLQQA DFVPRLRELL AAQPGVKPFQ LEIEVLETSA LEDWVGVSQS IEECREMGVL FALDDFGTGY SSLTYLKRLQ VDLLKIDQSF VRDMLDDPDD MAILQGVIGL AGAFRRNVIA EGVETIAHGT LLLQLGCDLG QGFGIARPMP ADLFPAWAAS WQRDAAWVAA GGTDHPSLMA TLQ
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