| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1976 |
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| Symbol | |
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| ID | 3964332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2121499 |
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| End bp | 2123739 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916796 |
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| Product | ribonuclease R |
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| Protein accession | YP_523232 |
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| Protein GI | 89900761 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00374672 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTGGACG AAGTTGAAGG AACCGTGCTG GGGCACCGTG ATGGACATGG GTTTGTGACC
CGTGATGACG GTCAACCCGA CATCTATTTG CCACCCAACG AGATGCGTGC CGTGCTGCAC
AAGGACCGGG TCAAGGTGCG CATTGTGCGC AGTGATCGCA AAGGTCGCCC CGAAGGCCGC
GTGCTTGAGA TCATCGAAAG AACAAGTCAA ACCATCATTG GGCGCTTGTT GCAGGAAAGT
GGCATCTGGA TTGTGGTGCC GGAAGACAAA TGCTACGGGC AGGATGTATT GATTCCGAAG
TCGGCGACCG GCCTGGCCAA GCCGGGTCAG GTCGTGGTCG TTGAGTTGAC CGAGCCACCG
TCCCTGTACG GACAGCCGGT TGGGCGCATC AAGGAAATAC TCGGCGAGGT CGACGACCCC
GGCATGGAGA TTGAAATTGC GGTGCGCAAA TACAGTGTGC CGCATGAGTT CTCAGAGGCC
TGCACTGCAT TGGCGCGCAC CTTGCCCGAC CACGTGCGTC CGCAAGACAA GAAGCACCGG
GTCGATCTGA CCGACGTGCC CTTGGTCACG ATCGACGGCG AGGATGCCCG TGATTTTGAC
GATGCGGTGT ACTGCGAACC AGTGAAAATT GGCAAGGGCA AGACGGCGGA GCAGGGCTGG
CGTTTGCTGG TGGCCATTGC CGACGTGAGC CATTATGTGG AAAACGGCTC GGCCATTGAT
ATCGACGCCT ATGAACGCGC CACCAGCGTG TATTTTCCGC GCCGCGTGAT CCCGATGCTG
CCGGAGAAAC TCTCCAACGG TCTGTGTTCG CTCAACCCTG AAGTCGAACG CCTGTGCATG
GTGTGCGACA TGATGATCAG CGCGGACGGG GAGGTTTCGG CTTACCAGTT TTACCCGGCT
GTGATGTGGA GCCATGCTCG CTTTACCTAC ACCGAGGTAG CTGCAATTTT GGCCAATACG
CATGGCCCCG AAGCCCTCAA GCGCAAAGAG CGGGTAGGTG ATTTGATCAA CCTGCACGAT
GTCTTTCAGG CCCTGCTGAA GGCGCGTGCA CGCCGCGGCG CGGTTGATTT TGAAACCGTT
GAGACGCAGA TCGTGTGTGA TGAGAGTGGG CGAATCGAGA AAATCATTCC GCGCACGCGC
AACGATGCGC ACAAAATTGT CGAAGAGGCC ATGCTGGCGG CCAACGTCTG CAGTGCAGAC
TTTATTGCCC AGAGCAAGCA TGCAGGGTTG TTTCGGGTGC ATGAAGGCCC GACACCCGAG
AAAAAAGAGA TTCTGCGCAA CTACCTTAAA GTGACCGGCG TGGGGCATTC CATCAGTGAC
AATCCCTCGC CGGGCGAGTT TCAGACCATT GCCAACGCCA CCAAAGACCG GCCCGACGCC
CAGCAGATTC ACTCCATGCT GCTGCGTTCC ATGCAGCAGG CGATTTACAC GCCCGTGAAT
GAAGGGCATT TTGGTCTGGC GTTTGATGCC TATACCCATT TCACCAGTCC GATTCGGCGC
TACCCGGATC TGCTGGTGCA CCGGGTCATC AAGGCGATTC TGGCCGGGAC CAAATACCAC
TTGCCGGTGT TGCCGCTGCC GGGCGAGGCT CACGCCAAGC TCTCACGGCG ACTCGAAAAG
GGCTTGGCCG CGCGCGTCGC CGAGCCGGGG CAGAAGCCCA AAAAATTGAG TGCCGAAACG
CAGGCCTGGC AAGCTGCGGG CATGCATTGC AGCGCCAATG AACGTCGCGC CGACGAGGCC
AGCCGCGATG TCGAAGCCTG GCTCAAGTGC AAGTACATGC GCGAGCATTT GGGTGAGGAG
TACGGGGGTG TTGTCAGCTC CGTGACCAGC TTCGGCATTT TTGTCACGCT GGACGCCATG
TATGTTGAGG GCCTGGTGCA TATCACGGAG CTCGGTGGCG ATTATTTCAA GTTTGATGAG
ATGCGCCAGG AGTTGCGCGG TGAGCGCACG GGTATGCGCT ACGCGATTGG CACCCGGCTT
CAGGTGCAGG TGAGCCGGGT GGACCTGGAT GGGCGACGCA TTGATTTCCG GCTGATTCAC
GAGGGGGAGG CACTGGCGGC GCGGGGCGGC AAAGACAAGG AGTTGCCGCG CGCCGCTGGC
AGCCGTGATG CTCCCGCTGG CGAGTCTGCC AATGCAGCGG GCAAGCGCCG CGCACGAAAA
ACTTCGGAAC CCGATGTGCG CGCGCCAAAA TCCGCCAGCA AGAGCAAGGA TCCAGGACGC
AAGCCGCGTC GACGCTCCTG A
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| Protein sequence | MLDEVEGTVL GHRDGHGFVT RDDGQPDIYL PPNEMRAVLH KDRVKVRIVR SDRKGRPEGR
VLEIIERTSQ TIIGRLLQES GIWIVVPEDK CYGQDVLIPK SATGLAKPGQ VVVVELTEPP
SLYGQPVGRI KEILGEVDDP GMEIEIAVRK YSVPHEFSEA CTALARTLPD HVRPQDKKHR
VDLTDVPLVT IDGEDARDFD DAVYCEPVKI GKGKTAEQGW RLLVAIADVS HYVENGSAID
IDAYERATSV YFPRRVIPML PEKLSNGLCS LNPEVERLCM VCDMMISADG EVSAYQFYPA
VMWSHARFTY TEVAAILANT HGPEALKRKE RVGDLINLHD VFQALLKARA RRGAVDFETV
ETQIVCDESG RIEKIIPRTR NDAHKIVEEA MLAANVCSAD FIAQSKHAGL FRVHEGPTPE
KKEILRNYLK VTGVGHSISD NPSPGEFQTI ANATKDRPDA QQIHSMLLRS MQQAIYTPVN
EGHFGLAFDA YTHFTSPIRR YPDLLVHRVI KAILAGTKYH LPVLPLPGEA HAKLSRRLEK
GLAARVAEPG QKPKKLSAET QAWQAAGMHC SANERRADEA SRDVEAWLKC KYMREHLGEE
YGGVVSSVTS FGIFVTLDAM YVEGLVHITE LGGDYFKFDE MRQELRGERT GMRYAIGTRL
QVQVSRVDLD GRRIDFRLIH EGEALAARGG KDKELPRAAG SRDAPAGESA NAAGKRRARK
TSEPDVRAPK SASKSKDPGR KPRRRS
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