| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1975 |
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| Symbol | rimO |
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| ID | 3964330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2119856 |
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| End bp | 2121250 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637916794 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_523231 |
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| Protein GI | 89900760 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00113002 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGAAG TTATTACAAA AAGCAATACA GCACCCAAAG TCGGTTTCGT CAGCTTGGGT
TGCGCCAAGG CGCTGACAGA TTCCGAACTG ATCCTCACGC AATTGAGCGC CGAGGGTTAT
CAAACCTCCA AGACATTTCA GGGTGCCGAT CTGGTGATCG TCAACACTTG TGGTTTCATC
GATGATGCGG TCAAAGAGAG TCTGGACACC ATCGGTGAAG CGCTGGCCGA AAACGGCAAG
GTGATCGTCA CCGGTTGTTT GGGCGCCAAG ACCGCCGAGG GTGGTGGCAA CCTGGTGCGG
CAAATGCACC CGAGCGTGCT GGCCGTCACC GGCCCGCAGG CAACGCAGGA GGTGATGGAT
GCGGTGCATG CCAACCTGCC CAAGCCGCAC GACCCGTTTA TTGATCTGGT GCCCAATGCT
TTTGGTGTGG CGGGCATCAA GCTCACGCCC CGGCACTACG CCTACATCAA GATCAGCGAA
GGCTGCAACC ACCGCTGCAC GTTTTGCATC ATTCCGTCCA TGCGCGGCGA TCTGGTGTCG
CGCCCGATTG GTGACGTGCT CAAGGAAGCG CGCGCCCTGT TTGAAGGCGG TGTGAAAGAG
TTGCTGGTGA TCAGCCAGGA CACGTCAGCG TATGGCGTGG ATGTCAAATA CCGCACCGGT
TTCTGGGATG GCAAACCCAC CAAGACCCGC CTGCTGGAAC TTGCCGCAGC ACTGGGCGAC
ATGGCTGAGC CTTATGGTGC CTGGGTGCGT TTGCACTATG TTTACCCGTA CCCGAGTGTC
GATGACTTGT TGCCTTTGAT GGCCGCCGGC AAAGTGTTGC CCTACCTGGA TGTGCCTCTG
CAACACAGTC ACCCGGAGGT GCTCAAGCGC ATGAAACGCC CGGCCAGCGG CGAGAAAAAT
CTGGAGCGCA TCCAGCGCTG GCGTGAGGTC TGTCCCGATA TTGTGGTGCG CAGCACGTTC
ATCGCAGGAT TTCCGGGCGA AACGGAAGAA GAGTTTTCGC ATTTGCTCGA TTTCATGCGG
GAGGCTCAAA TTGACCGTGC CGGTTGTTTT GCCTACAGCC CGGTGCAGGG TGCTGTCGCC
AATGACATTG GCGGCATGTT GCCGATTGAA TTGCGCGAAG AGCGGCGCGC ACGCTTCATG
GCGGTCGCCG AGGCAGTCTC AAGCGCCAAA CTGCAACAGC GCATCGGCGC CACGATGCAG
GTGTTGGTCG ATTCCGCGCC TGGTTTGGGT AAAAAGGGTG GCCTCGGCCG CTCCTATGCC
GATGCGCCTG AGATTGACGG TGTGGTGAAA CTGCTGCCGC CGGAAAAGAT CAGCAAGACT
TTACGGGTTG GTGAATTTAC CAAAGCGCGC ATTGTCGGTG CACAGGGACA CGATCTTGTG
GCTCAGCCGT TTTAA
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| Protein sequence | MSEVITKSNT APKVGFVSLG CAKALTDSEL ILTQLSAEGY QTSKTFQGAD LVIVNTCGFI
DDAVKESLDT IGEALAENGK VIVTGCLGAK TAEGGGNLVR QMHPSVLAVT GPQATQEVMD
AVHANLPKPH DPFIDLVPNA FGVAGIKLTP RHYAYIKISE GCNHRCTFCI IPSMRGDLVS
RPIGDVLKEA RALFEGGVKE LLVISQDTSA YGVDVKYRTG FWDGKPTKTR LLELAAALGD
MAEPYGAWVR LHYVYPYPSV DDLLPLMAAG KVLPYLDVPL QHSHPEVLKR MKRPASGEKN
LERIQRWREV CPDIVVRSTF IAGFPGETEE EFSHLLDFMR EAQIDRAGCF AYSPVQGAVA
NDIGGMLPIE LREERRARFM AVAEAVSSAK LQQRIGATMQ VLVDSAPGLG KKGGLGRSYA
DAPEIDGVVK LLPPEKISKT LRVGEFTKAR IVGAQGHDLV AQPF
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