| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1956 |
|---|
| Symbol | |
|---|
| ID | 3963072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2099426 |
|---|
| End bp | 2100382 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637916775 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_523212 |
|---|
| Protein GI | 89900741 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.209057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAG TGACTCCCGC TCCAAGCTCC CAGCCAACAA CATCCCGCCT GTTGCGCGGC
TATTTTTATC TGACCCTCAG CATGTCCCTG GTGGGCAGCT ACGTGGCCTT GTCCAAGCCA
CTGGCGGCCG CACTTCCGGT GTTGTTGCTG GCCTGGTTGC GATTTGGCAT TGGCGCTCTG
GCGATGCCGC ATTGGCTCGC CAAACCAGCG ACCGAAGTAC CGATGACCTG GCACACAAAA
AGGCTGCTTT TTCTGGAGTC TTTTTTAGGC AATTTTCTGT TCACCCTGTG CATGCTGTAT
GGCGTGAGCC TGACCAGCGC GGTCTCGGCG GGCATCATCA TGGCCACCAT TCCGGCCATG
GTGGCACTGC TGAGCTGGGT CTTTTTGCGC GAGCGTATTG GGCTGCGGGT GTGGACGGCC
ATTGGCTGCG CCGCCTTCGG TATTGTCCTT TTTGCACTGT CAAAATCAGG ACAAGTTACG
CAGACAGGAC ACGGGCTGGA GCCACCTTCA ATATATAAAG ACGCATGGCT GGGCAATCTC
CTTGTTTTTG CTGCAGTCGT GTGCGAGGCT TCTTACGCCG TCATCGGCAA GCAGCTCACT
GGTGTGTTGA CACCCAAACG TATCACCGCA CTCATCAACC TGTGGGGCTT CATCTTGATG
ACGCCATTCG GTCTTTACGC CGCCATGAAA TTTGATTTTT TGACGGTGCG GCCCGCGACC
TGGCTGCTGC TCGTGTTCTA TGCGCTGGCG GCCAGTGTCT GGACGGTCTG GTTGTGGATG
ACTGGACTCA AGACCGTACC GGCTGCCAGT GCCGGCGTCT TCACCGTGAT GCTGCCGATC
TCGGCGGCGC TGGTGGGGGT TCTGGTTTTG GGCGAAACGC TCAGTGGCAT GCAGGTACTG
GCATTCGCCA TCGCCTTGGC TGGTGTGGTG TTGGCCACAC TGCCAGCACA GCGCTAG
|
|---|
| Protein sequence | MTAVTPAPSS QPTTSRLLRG YFYLTLSMSL VGSYVALSKP LAAALPVLLL AWLRFGIGAL
AMPHWLAKPA TEVPMTWHTK RLLFLESFLG NFLFTLCMLY GVSLTSAVSA GIIMATIPAM
VALLSWVFLR ERIGLRVWTA IGCAAFGIVL FALSKSGQVT QTGHGLEPPS IYKDAWLGNL
LVFAAVVCEA SYAVIGKQLT GVLTPKRITA LINLWGFILM TPFGLYAAMK FDFLTVRPAT
WLLLVFYALA ASVWTVWLWM TGLKTVPAAS AGVFTVMLPI SAALVGVLVL GETLSGMQVL
AFAIALAGVV LATLPAQR
|
|---|
| |