| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1949 |
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| Symbol | |
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| ID | 3964131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2092623 |
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| End bp | 2094251 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916768 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_523205 |
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| Protein GI | 89900734 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0969647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTGTT CAAAATCAAG CGCACGCCGA AAATTCGGCC TCAAGCCTGC TGTGCTGTGC
GCCATCGCAT TGCCCGCCTT GTTGGCGTTG GCGCCGGCCG CGGCCAAGAC GCTGGTGTAT
TGCTCGGAAG GCAGCCCGGA GAACTTTTAC CCGGGCGTCA ACACCACCGG CACTTCGTTT
GATGCCGGGG TCCAGATCTA TGACACGCCG GTGCAGTTCG AGCGTGGCGG CACCAAGGTC
CTGCCCGCCC TGGCGGAAAA GTGGGACATC TCCAAAGACG GCACTGAATA CACCTTTCAC
CTGCGCCAAG GCGTGAAATG GCAGTCCAAC AAAAACTTCA AGCCAACGCG CGACTTCAAC
GCCGACGACT TCATTTTCTC CATCGAGCGC CAGTGGAAGC AAGCTGACCC CTACTTCAAG
GTCACCAGTT CCAACCACTC CTACTTTGAC GACATGGGCA TGCCCAAGCT GCTCAAGTCG
GTCGACAAGG TGGACGCGTA CACGGTCAAG ATCACGCTGA ACAAGCCGGA AGCCCCGTTC
CTGGCCAATA TGGCGATGCC GCACAACGGC GTGCAGTCCA AGGAATATGC GATTGCCATG
CTCAAGGCCG GCACCCCTGA AAAACTTGAC CAGGAGCCGG TTGGCACTGG CCCGTTCTCC
CTGGTGCAGT ACCAGAAAGA CGCACTGATC CGCTACAAGG CGTTCCCGCA GTACTGGGCC
GGCAAGGCCA AGATTGACGA TTTGATTTTT GCCATCACCC CCGACGCCTC GGTGCGCTGG
GCCAAGCTGC AAAAAGGTGA ATGCCATGTC ATGCCCTACC CCAATCCGGC GGATCTGGAG
GCCATGCGCA AGAACACCAG CATCAAGGTG CTGGAGCAAC CCGGCCTAAA CGTCGGTTAT
CTGGCCTACA ACACAACCAA AAAGCCGTTT GATGACGTGC GCGTGCGCAA AGCCATCAAT
ATGGCGATCG ACAAAAAGGC GATCATTTCA GCGGTCTATT TGAGCACCGG CATCCCGGCC
ATCAACCCGA TCCCGCCGAC GATGTGGTCT TACAACAAAT CCGTCAAGGA CGACGCTTTT
GACCCGGCAG CCGCCAAGAA ACTGCTGGCG ACCGCTGGCT ACCCGGACGG GTTCAGCACC
GACCTGTGGG CCATGCCGGT ACAGCGCCCC TACAACCCCA ATGCGCGCCG GATTGCCGAG
CTGATGCAAG CCGACCTGGC CAAAGTGGGG GTCAAGGCCG AAATCAAGAG CTTTGAGTGG
GGTGAATACC GCAAGCGCAT GCAGGCCGGC GAACACCAGA TGGGCATGCT CGGCTGGACC
GGTGACAACG GCGACCCTGA CAACTTCCTC AACACCTTGC TGGGCTGCAC CTCGGCCAAG
GCCAATGGCT CCAACGTTGC CAAGTTCTGC TTCCAGCCGT TCGAGGACTT GATCCAGAAG
GCCAAGATCA CCTCCAACCT GGCCGAGCGC ACCAAACTGT ATGAGCAGGC CCAGGTGATC
TTCAAGGAAC AGGCGCCCTG GTTCACCATC GCCCACGCGG TTGCCCTGAA GCCGGTGCGC
AATGAAGTCG TCGACTTCAA GATCAGCCCG TTTGGCACCC ACGTGTTCTA TGGCGTTGAC
ATCAAGTAA
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| Protein sequence | MTCSKSSARR KFGLKPAVLC AIALPALLAL APAAAKTLVY CSEGSPENFY PGVNTTGTSF
DAGVQIYDTP VQFERGGTKV LPALAEKWDI SKDGTEYTFH LRQGVKWQSN KNFKPTRDFN
ADDFIFSIER QWKQADPYFK VTSSNHSYFD DMGMPKLLKS VDKVDAYTVK ITLNKPEAPF
LANMAMPHNG VQSKEYAIAM LKAGTPEKLD QEPVGTGPFS LVQYQKDALI RYKAFPQYWA
GKAKIDDLIF AITPDASVRW AKLQKGECHV MPYPNPADLE AMRKNTSIKV LEQPGLNVGY
LAYNTTKKPF DDVRVRKAIN MAIDKKAIIS AVYLSTGIPA INPIPPTMWS YNKSVKDDAF
DPAAAKKLLA TAGYPDGFST DLWAMPVQRP YNPNARRIAE LMQADLAKVG VKAEIKSFEW
GEYRKRMQAG EHQMGMLGWT GDNGDPDNFL NTLLGCTSAK ANGSNVAKFC FQPFEDLIQK
AKITSNLAER TKLYEQAQVI FKEQAPWFTI AHAVALKPVR NEVVDFKISP FGTHVFYGVD
IK
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