| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1942 |
|---|
| Symbol | |
|---|
| ID | 3964124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2085766 |
|---|
| End bp | 2086530 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916762 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_523199 |
|---|
| Protein GI | 89900728 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.934009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTGCCC CCCCACTCGC CGACCATTCC ACAGAGGAAA TACCAGTTGA TGATGCCGGT
CGCCCGGCCG TCTTCACCGC AAAAACCTTA AGCAAAACCT ACCAGATGGG CGAGGTGAAG
GTTCAGGCCC TGGTGGATGT CGATCTGACC ATCTATCGCG GTGAATTCAT CGTTTTGCTG
GGTCCGTCTG GCAGCGGCAA ATCTACCCTG CTCAACATCC TGGGGGGGCT GGACCGCCCG
ACCAGTGGCC TGGCCCGTTT TGCCGAGCAT GACCTCACGG CGGCGACCGA GTCGCAATTG
ACGCAATACC GGCGCGAGCA TGTGGGCTTT GTGTTCCAGT TCTACAACCT GATTCCCAGC
CTGACCGTGC GCGAGAACGT TGAGCTGGTC ACCGATATTG CCGACAACCC CATGCCGGCC
GAAGAAGCCC TCGGCCTGGT CGGGCTGGCC GAGCGCCTGG ATCACTTCCC GTCCCAGCTG
TCCGGCGGCG AGCAGCAGCG CGTGGCCATC GCGCGCGCCA TCGTGAAGCG CCCGGAAGTG
TTGCTGTGTG ACGAGCCGAC CGGCGCGCTG GACTATGTGA CCGGCAAACT GGTGCTGGAA
GTGATCGAAC GCGTCAACCG GGAGCTGGGC ACAACGGCCA TCGTCATTAC GCACAATGCC
GCGATTGCCA GCATGGCCGA TCGCGTGCTG TACCTGGGCG GCGGGCGCAT CCAGCGCGTT
GAACCAAACG CCCACAAACT GAAACCGTCG GAGTTGTCTT GGTAA
|
|---|
| Protein sequence | MIAPPLADHS TEEIPVDDAG RPAVFTAKTL SKTYQMGEVK VQALVDVDLT IYRGEFIVLL
GPSGSGKSTL LNILGGLDRP TSGLARFAEH DLTAATESQL TQYRREHVGF VFQFYNLIPS
LTVRENVELV TDIADNPMPA EEALGLVGLA ERLDHFPSQL SGGEQQRVAI ARAIVKRPEV
LLCDEPTGAL DYVTGKLVLE VIERVNRELG TTAIVITHNA AIASMADRVL YLGGGRIQRV
EPNAHKLKPS ELSW
|
|---|
| |