| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1928 |
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| Symbol | |
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| ID | 3960766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2071728 |
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| End bp | 2073191 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916748 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_523185 |
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| Protein GI | 89900714 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.793322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAAG CCACAACCAT CCTCGTGGTG GAGGATGCGT TGGGCGACTT TGGTTTGATC
AAATCCTGTC TGCAACAAGC CGGATTCTGC CGAGACGACC ATGAGCCTTC TCTGATATGG
GCAAAATCTC TGGCGCAAGG TATTGCGCAA GCGCGTCAGG TCAGGCCCGA CGTCATTCTG
CTCAAGACTT CCTTGCCTGA TTCATCCGGG ATGTCCACCG TGGTGGCGAT GAACGCTGCC
TTACCCAATG TGCCCATCAT TGTGCTCAAC GGCGTCGATG ACGATAACTT TGCCATTGCC
GCCCTCGAGG CCGGTGCGCA GGACTATTTG ATCAGAGGCC AGTTTGATTA CAAAGCCTTG
GGACGCACCA TGCGCAACGC GCTGGTGCGT GCGAAACTTG AGTCGCGTTT GCGACTGTTT
GAAGTTGCCC TGGATTCGGC TGCGAATGGC ATTGTGATCA CCGACGTCCA GGGGAAAATT
GAGTGGGCCA ACCTGGCCTT CACTCAGATG ACCGGCTATT GTGTTGAGGA GGCGCTCGGC
TGCAATCCGA GCCAGTTGGT GAGTTCCGGC AAGCATGATG GCGCGTTTTA CCGGCACATG
TGGGCGACCA TCCTCTCGGG GCAGGTCTGG CGCGGCGAAC TCATCAACCG GCGCAAGGAC
GGCTCCTTCT ATGACGAGGC CATGGCGATT GCGCCAGTGA CTGCGAGCGA CGGTTCGATT
CGTAACTTTG TTGCCATCAA GCAAGACATC ACCGAAAGCA AGGCCGCCGA GCTGCTGATT
CAGAAAAGCG AGCAGCAGTT GGAATTGGCG CTGGCCGGCT CCGGCCTGGG TCTGTGGGAC
TGGCATGTCG GCAGTGGCGA GTTTGCGACC AGTGCGCGCT GGTGTGCCAT GCTGGGCTAC
GGCCAGGATG AGATCGAACC TAACATCCGC AGCCTGGAGA AGCTGGTGCA CCCGAAGGAT
TGGCCACTGG TCTGTGCCGC GCGGGACGCA CACTTGAGCG GCGAAACGCG CGCTTATGAA
TCCGAACACC GGATGCGCCA CAAAGACGGC CATTGGGTCT GGGTGCTGGA ACGGGGCAAG
GTGGTTGTCC GCGACGCCGA CGGGGGCCCC TTGCGTGCTG CCGGTACGCA GCTCGATATC
AGCGACAACA AGCGTCTCAA TCAGGAGGGT TCTGAGTTGC TGCGGCGCAT TGAGTCGCTG
ATGCGTGAGG TCAGCAAGCC GCCTGCACTT GTCGAGCGCG AGCGGTCAGG TGAGTTGGAT
AGGTCGGCGC GCATTAGCGC CCGTCAACGT CAGGTCCTTG AGCTCGTCGC CATGGGGTGC
ACATCCGCAC AAATCGCAGA GAAATTGCAA ATCTCGCCTG CCACCGTGGT GACCCACCGA
CGCGATCTGA TGGGCAAACT CGATTTGCAC ACTGTTGCCG AACTGACACG CTATGCGATG
CAGAGCAAGC TGGGTTCAGA ATAG
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| Protein sequence | MAQATTILVV EDALGDFGLI KSCLQQAGFC RDDHEPSLIW AKSLAQGIAQ ARQVRPDVIL
LKTSLPDSSG MSTVVAMNAA LPNVPIIVLN GVDDDNFAIA ALEAGAQDYL IRGQFDYKAL
GRTMRNALVR AKLESRLRLF EVALDSAANG IVITDVQGKI EWANLAFTQM TGYCVEEALG
CNPSQLVSSG KHDGAFYRHM WATILSGQVW RGELINRRKD GSFYDEAMAI APVTASDGSI
RNFVAIKQDI TESKAAELLI QKSEQQLELA LAGSGLGLWD WHVGSGEFAT SARWCAMLGY
GQDEIEPNIR SLEKLVHPKD WPLVCAARDA HLSGETRAYE SEHRMRHKDG HWVWVLERGK
VVVRDADGGP LRAAGTQLDI SDNKRLNQEG SELLRRIESL MREVSKPPAL VERERSGELD
RSARISARQR QVLELVAMGC TSAQIAEKLQ ISPATVVTHR RDLMGKLDLH TVAELTRYAM
QSKLGSE
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