| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1903 |
|---|
| Symbol | |
|---|
| ID | 3963232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2043329 |
|---|
| End bp | 2044369 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637916723 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_523160 |
|---|
| Protein GI | 89900689 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00223597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACT ACAAGCACCC CGGCCGCAAG GTCTGCAACC AAGAAGGACA TCACATGAAA
CTCTCTACCA CCCTGATTCT GAGCACCCTG ACCCTGGCCG CCAGCGCCGC CTTTGCCGCT
GACCAGCCCG TCATCGGTTT GATCACCAAG ACCGAAACCA ACCCCTTCTT CGTCAAGATG
AAGGAAGGCG CCCAGGCCGA GGCCAAGAAA GCCGGTGCCA AGCTGATGAC CGCCACCGGC
AAGAAGGACG GTGACACCGC CAGCCAGATC ACCGCGCTGG AGAACATGGC CGCCGCAGGT
GCCAAGACGA TTCTGATTAC CTCCACGGGC GACGCCATCA TCCCGACCGT GAAAAAAGTG
CAGGCCAAGG GCGTTCAAGT GATTGCGCTG GACAGCCCGT TTGACGGCGC GGATGCCCTG
TTTGCCACCG ACAACTACAA AGCCGGCGTG CTGATCGGCC AGTATGCCAA GGCAGCCCTG
GGCGACAAGC CCGCCAAGAT CGCCATGCTC GATTTGTTCC CTGGCCACCC GGTGGGCGCA
CAACGCCACA ACGGTTTCAT GAGCGGCTTT GGCTTGAAGG CCAATGATGC CAAATCCAAC
GAACTCTCCA GCACCGCCGA GACGGTGTGC GCCGGCGACA CCGACGGTAA CCAGGCCAAG
GGTCAGACCG CGATGGAAAA CTGCCTGCAA AAGAACCCGG ACATCAATGT GGTCTACACC
ATCAATGAAC CCGCTGCCGC AGGTGCCTAC AACGCGCTGA AAAAAGCCGG TAAGGAAAAA
GGCGTGATCA TTGTGTCGGT GGACGGCGGC TGCCAGGGTG TCAAGGACAC CGCCGCCGGC
AAGATTGCCG CCACCTCGCA GCAATACCCG CTGAAGATGG CCTCCATGGG TGTGGCTGCC
GGGGTTGAAT ACGCCAAGAC CGGCAAGAAG GTCTCTGGCT ATGTGGACAC TGGCGTGACG
CTGATCGCCA ACAAGGCAGT GACCGGTGTG GACAGCAAGG ACACCAAGGT CGGCTTGGAT
CTGTGCTGGG GCAACAAGTA A
|
|---|
| Protein sequence | MSHYKHPGRK VCNQEGHHMK LSTTLILSTL TLAASAAFAA DQPVIGLITK TETNPFFVKM
KEGAQAEAKK AGAKLMTATG KKDGDTASQI TALENMAAAG AKTILITSTG DAIIPTVKKV
QAKGVQVIAL DSPFDGADAL FATDNYKAGV LIGQYAKAAL GDKPAKIAML DLFPGHPVGA
QRHNGFMSGF GLKANDAKSN ELSSTAETVC AGDTDGNQAK GQTAMENCLQ KNPDINVVYT
INEPAAAGAY NALKKAGKEK GVIIVSVDGG CQGVKDTAAG KIAATSQQYP LKMASMGVAA
GVEYAKTGKK VSGYVDTGVT LIANKAVTGV DSKDTKVGLD LCWGNK
|
|---|
| |