| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1887 |
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| Symbol | |
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| ID | 3962265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2024915 |
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| End bp | 2025898 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916707 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_523144 |
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| Protein GI | 89900673 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.876301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACCTG AAAAACTCGA TGGCGGCGCG AGCTGGCCAC TGATCCTTGA CGCCGTGGAG
CTGGGTCTGG TGCTGGTGGA CGCCGACGCG CGCGTGTTGC TGTGGAACGC CTGGCTGGCC
CGCCACAGCG GGGTGAGCGC CCAGACAGCC CGCGGTCAGC CCTTGGCCGG CGTGTTTGGC
GCGGGCCTGT CGGCCTCTTT TCTGACCGCG TTGAGCAACA CCCTGCGCTA CAGACTGCCG
GTGGTGCTGT CCAATGTGCT GCACTTTTGC CCCCTGCCCC TGTACGCGCA GACACCAGCA
GACGCAGCGG CCGCCCGGAT GCCGCACGCC ATCACCATGA CACCATTGGT GCTGCCCCCA
TGGGGTGCCT GTTGTCTGAT TCAGATCACC GATTCCAGCC GGGCAATTTC CCGCGAAAAA
GTACTTCAAA GGCAATCAGA ACGTCTCAAC CGCGAGGTGA TGACCGACAG TCTCACACGC
GCCTTCAGTC GGGGCTTTTT CGACCATTTC TACCAGCAGG AATTCGCGCG GGCGCAAAGA
AAAGGAACCA AGCTGTCGCT CATCATGATC GACGTGGATT ACTTCAAGGA CTACAACGAT
GCATATGGTC ACCCTGCCGG CGACAAGGTG CTCATTGCCG TGGTACAGGC CCTTCAGGCC
GTCCTGTTGC GTTCAACCGA CAAGCTGGCC CGCTATGGGG GTGAAGAGTT TGCCGTCATA
CTGCCCGACT GCGGTGAGCA CAAAGCGTTG GCAATTGCCG AACTGCTCCG GACCGCGGTT
CTGGCGCTCA ATCTGCCGCA TCGAAAATCC GCCATATCGA ACCAGCTCAC CGTCAGTCTG
GGCACCTCCA CCCTGAAAGC TGGCCAAACC AGCAGCGCAC AAGCGCTGCT GGATGCGGCT
GATCAGGCCC TGTACGCCGC CAAGAACCAG GGGCGCAACT GCGTGCAGAG CCGCAGTCCA
CAGACCGTCG CAGCGCCTGC CTGA
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| Protein sequence | MEPEKLDGGA SWPLILDAVE LGLVLVDADA RVLLWNAWLA RHSGVSAQTA RGQPLAGVFG
AGLSASFLTA LSNTLRYRLP VVLSNVLHFC PLPLYAQTPA DAAAARMPHA ITMTPLVLPP
WGACCLIQIT DSSRAISREK VLQRQSERLN REVMTDSLTR AFSRGFFDHF YQQEFARAQR
KGTKLSLIMI DVDYFKDYND AYGHPAGDKV LIAVVQALQA VLLRSTDKLA RYGGEEFAVI
LPDCGEHKAL AIAELLRTAV LALNLPHRKS AISNQLTVSL GTSTLKAGQT SSAQALLDAA
DQALYAAKNQ GRNCVQSRSP QTVAAPA
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