| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1843 |
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| Symbol | |
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| ID | 3963018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1981479 |
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| End bp | 1983155 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916663 |
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| Product | alpha subunit of malonate decarboxylase |
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| Protein accession | YP_523100 |
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| Protein GI | 89900629 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
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| TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.193245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAAG CAAATGGGCG CTGGAACCAG CAGGCACAGG GACGTGCGCA GCGGCTGGGC
CGCGCTGCGG CTGTTTTGGG TACACGCCTG CATGGCAAGC GGGTATTGGC GGAAGATGCC
ACCAAGCTGC TCGAAGCTGT GCTGGAGCCT GGCGACCGGG TTTGTCTGGA AGGCAACAAC
CAGAAGCAGG CCGATTTTTT GGCCCGCGCA TTGGCGCAGT TAAACCCGGC GCAGGTGCAC
GGCCTGCACA TGGTGCAGTC GGTATTGGCC TTGCCTGAAC ATTTGGATGT GTTTGAGAGC
GGCATCGCCT CCAAGCTCGA CTTCTCGTTC TCCGGGCCAC AAAGCGCTCG CCTGGCCAAG
CTGGTTTCTG GCGGGCAAAT CCAGATAGGC GCGATACATA CCTACCTGGA GTTGTTTAGC
CGCTACTTTG TAGACCTGAC ACCACGCGTG TCGCTGGTCT GCGCGCAAGC GGCTGACGCG
CATGGCAATC TTTTTACGGG CCCCAATACG GAAGACACAC CGGCCATCGT GGAGGCCACT
GCGTTCAAAA GCGGCATTGT GATTGCGCAA GTCAATGAGC TGGTTGAGAC GGTCGACCGC
GTGGATATTC CCGGCGACTG GGTGGATTTT GTCATCCTGG CGCCCAAGCC CAATGTCATT
GAGCCGCTGT TTACCCGCGA CCCAGCGCAA ATCTCCGAAA TCCAGGTGCT GATGGCCATG
ATGGCGATCA AGGGCATCTA TGCTGAATAC GGGGTGCAGA GGCTCAACCA TGGCATCGGG
TTTGACACAG CGGCGATTGA GCTTTTGCTG CCCACCTATG CCGAATCGCT TGGTTTGAAG
GGCAAAATAT GCAATCACTG GGCGCTTAAC CCACACCCGG CGCTGATCCC TGCTATCGAG
GCGGGATGGG TGGAGTCGGT GCATTCATTT GGCTCAGAGC TCGGCATGGA AAACTACATC
CGGGCCAGAC CCGATGTGTT CTTTACCGGT GCAGATGGCA GTTTGCGCAG CAACCGGGCG
CTGTGCCAGG CGGCAGGCCA CTATGCCTGC GACATGTTCA TTGGCTCCAC CTTGCAGATT
GACCTCAACG GCCATAGCTC CACTGCCACT CTGGGGCGAA TCGCCGGCTT TGGTGGTGCC
CCCAACATGG GTGCTGACGC ACGCGGTCGC CGCCATGCGA CCCCTGCCTG GCTGAAAGCC
GGTGCGCAAG CGCACCAGGG ACGCACGGGC GTGTCCGCCA TGCCACGCGG GCAAAAACTG
GTGGTGCAAA TCGTGGAAAC CTTCCGGGAA CACATGCAGC CCGCTTTTGT GGAAAAGCTC
GATGCCTGGC AGTTAGCCGA ACAGGCCCAT ATGGAGATCC CGCCGGTGAT GATTTACGGC
GACGACGTCA CCCACATTCT GACCGAAGAA GGCATTGCCA ACTTGCTGCT GTGCCGCACC
GACGAAGAAC GCGAACAAGC TATTCGGGGC GTGGCAGGCT ACACCCCGGT GGGCTTGGCG
CGGGACAGGC GCATGGTAGA AAACCTGCGT GACCGAGGCA TTATTCAACG CGCCGAAGAC
ATCGGCATCG ACAAGCGCGA TGCCACGCGC AGCCTGCTGG CGGCGCGCAC TATGCGCGAT
TTGGTACGTG CCTCGGGCGG GCTTTATGAC CCGCCCAAAC GGTTTCGCAA TTGGTAA
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| Protein sequence | MNQANGRWNQ QAQGRAQRLG RAAAVLGTRL HGKRVLAEDA TKLLEAVLEP GDRVCLEGNN
QKQADFLARA LAQLNPAQVH GLHMVQSVLA LPEHLDVFES GIASKLDFSF SGPQSARLAK
LVSGGQIQIG AIHTYLELFS RYFVDLTPRV SLVCAQAADA HGNLFTGPNT EDTPAIVEAT
AFKSGIVIAQ VNELVETVDR VDIPGDWVDF VILAPKPNVI EPLFTRDPAQ ISEIQVLMAM
MAIKGIYAEY GVQRLNHGIG FDTAAIELLL PTYAESLGLK GKICNHWALN PHPALIPAIE
AGWVESVHSF GSELGMENYI RARPDVFFTG ADGSLRSNRA LCQAAGHYAC DMFIGSTLQI
DLNGHSSTAT LGRIAGFGGA PNMGADARGR RHATPAWLKA GAQAHQGRTG VSAMPRGQKL
VVQIVETFRE HMQPAFVEKL DAWQLAEQAH MEIPPVMIYG DDVTHILTEE GIANLLLCRT
DEEREQAIRG VAGYTPVGLA RDRRMVENLR DRGIIQRAED IGIDKRDATR SLLAARTMRD
LVRASGGLYD PPKRFRNW
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