| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1842 |
|---|
| Symbol | |
|---|
| ID | 3963017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1980128 |
|---|
| End bp | 1981477 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637916662 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_523099 |
|---|
| Protein GI | 89900628 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.023128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGAGC TTTCCATTGG CCTGTCATAC GGCGCAGTCA CCCTGCTGGT GATGTTCTCG
GGCATGCCCA TTGCATTCGC CCTGGGCACT GTGGCCGTGA CGTTCATGTA TTTCTTCATG
CCCGCCTCAT CGCTGGATAC GGTAACGCAG AACGTTTACG AAGAAATGGC ATCGATTACT
TTGTTGTCGA TCCCGCTGTT CATCATGAAA GGCGCAGCAA TCGGCAAGTC GCCGGCCGGG
CAAGACCTTT ACAGCGCCAT TCACGCCTGG CTGCATAAAG TGCCCGGCGG TCTGGGCATT
GCCAATGTGT TTGCCTGCGC CCTGTTTGCC GCCATGGCCG GGTCGTCGCC CGCCACCTGC
TCGGCGATCG GTTCTGCCGG CATTCCCGAG ATGCGCAAGC GTGGCTATTC GCCCGGCTTT
GCTGCCGGCA TCATCGCCGC CGGAGGCACC TTGGGTATTT TGCTGCCACC GTCGATCGTC
ATGATCTTGT ATGCCGTGGC TGCCGAGCAA TCACTGGGCC GCTTGTTTCT GGCGGGCATC
GGACCGGGCC TGCTTCTGGT GGCCTTGTTC GCAGGATACG CCGTGGTACG GGCGCGCCAG
GAATATAAAC AAGCCCTGGT CATCTACCAG CAAGGCGGCC CCAAGTCAGC CTACCTGATT
GAGGAGCACT TTACGCTGGC ACAAAAAGTC GAAATGCTGC CGCGTGTGCT GCCCTTTGTG
ATCTTGCTGA TTGGTGTCAT GGTGGCCTTG TATGGCGGCT TGGCCACGCC GTCTGAAACT
GCAGGCCTGG GTGGTTTGAT GGCACTTGGT TTGATTGCCG TCGTCTATGG AATTTGGCGC
CCCAAAGACG TGGCACCAAT TCTGACCTCG ACGTTGAAGG AATCGACCAT GCTGATGCTG
ATCATTGGCA TGTCGCTGCT GTACAGCTAC GTGATGAGTC ACTTGCATAT CAGCCAAGGC
GCGGCCCAGT GGATTGTGGC GATGCAGCTC TCCAAATGGG TGCTGCTGGG TGTGATCTTG
TTGATGGTGA TCGTGTTGGG ATTCTTCCTG CCGCCGGTAT CCATCATTTT GATGACCGCA
CCCATTATCC TGCCACCCTT GAAAGCTGCG GGGTTTGATT TGATCTGGTT TGGCGTGGTG
ATGACCATCG TGATGGAAAT GGGCTTGATC CACCCCCCCG TCGGTCTGAA CATTTTCGTC
ATCAAGAACG TGGCGCCTGA TATCCCGCTC AAGGATGTAA TCTGGGGGGT GATGCCGTTC
GTCGGCTTGA TGTTTGGCGC CGTATTCCTG CTATGCCTGT TTCCGGGCAT CGTGACTGGG
TTGCCCAATC TGGTGATGGG TGTCAAGTGA
|
|---|
| Protein sequence | MSELSIGLSY GAVTLLVMFS GMPIAFALGT VAVTFMYFFM PASSLDTVTQ NVYEEMASIT
LLSIPLFIMK GAAIGKSPAG QDLYSAIHAW LHKVPGGLGI ANVFACALFA AMAGSSPATC
SAIGSAGIPE MRKRGYSPGF AAGIIAAGGT LGILLPPSIV MILYAVAAEQ SLGRLFLAGI
GPGLLLVALF AGYAVVRARQ EYKQALVIYQ QGGPKSAYLI EEHFTLAQKV EMLPRVLPFV
ILLIGVMVAL YGGLATPSET AGLGGLMALG LIAVVYGIWR PKDVAPILTS TLKESTMLML
IIGMSLLYSY VMSHLHISQG AAQWIVAMQL SKWVLLGVIL LMVIVLGFFL PPVSIILMTA
PIILPPLKAA GFDLIWFGVV MTIVMEMGLI HPPVGLNIFV IKNVAPDIPL KDVIWGVMPF
VGLMFGAVFL LCLFPGIVTG LPNLVMGVK
|
|---|
| |