| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1838 |
|---|
| Symbol | |
|---|
| ID | 3963013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1976472 |
|---|
| End bp | 1977671 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916658 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_523095 |
|---|
| Protein GI | 89900624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000495341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT TTCGTACCAT TGCATTGAGC TCAGTCGCCC TCGCCGTCGC ATCCATGAGT
ATGGCGGCTG ACAACATCAA AATTGGCTTG CAAGGGCCGC TCACCGGCGG CTCCAGCCCC
ATGGGCGTTT CGATGCGCGA CGGTGCCAAG TTGGCCGTGA CCGAGATCAA CGCCCATGGC
GGCTTATTGG GACGCAAGAT CGAGATGATC GAGCGTGATG ATGAAGCCAA AAACGAGCGC
GGTGTGCAAA TCGCCCAAGA GCTGATCAAC AAAGAAAAAG TGGTGGCCAC GGTGGGCTAC
ATCAACTCCG GCGTAGCGCT GGCGTCACAG CGCTTTTACC AGGAAGCCAA GATTCCGGTG
ATGAACAACG TGGCCACGGC CACCACCATC ACCCAGCAGT TTGCCGATCA GCCGCAAAAC
TACGTGTTTC GCAACTCAGC CAATGACACC ATCCAGTCAA CTTTGATTGT GGAAGAAGTC
ATTGGTCGTC GCAAATACAC CAAGGTCGCC ATCCTGGCAG ACTCCACCAA CTACGGCCAG
CTTGGCCGGG CTGATCTGGA AAAAGCCTTG GCTGCCAAGG GCATTACCCC TGTTGCCACA
GAAAAGTACA ACATCAAGGA TGTCGATATG ACACCGCAGT TGCTCAAGGC CAAAGAAGCT
GGCGCACAGG TCGTGATCAC CTATGGTATT GGCCCGGAAC TGGCGCAAAT TGCCAACGGC
ATGATCAAGC TGGGCTGGAA GGTTCCAATG ATGGGTTCCT GGACCTTGTC CATGGGCAAC
TTCATTGACA ACGCCGGTAA AAATGCCGAC GACGCCCTGA TGCCACAAAC CTTTATTCAA
GAAGGCAACA CGCCCAAGCG CAAGAGTTTC ATCGATGCCT ACCAAAAGAC TTACAAGGTG
ACTCGCATTC CGTCACCAGT GTCTGCAGCG CAAGGCTACG ATTCGATCTA TTTGCTGGCC
GCCGCTATCA AACAGGCCGG CTCAACGGAA GGCCCCAAAG TGCTGGCAGC ATTGGAAGAC
TTGAAGACCC CGGTCGAAGG TGTGGTCACC ACCTACAACA AGCCTTTTTC CAAGGCAGAC
CATGAGGCTA TCACCCTCAA CATGCCGGTG ATTGGCAAGG TTCAAGATGG TCACGTGGTC
TACGCCTACG AAGACGACAA GAAGAAGGGC GGCGAAGTCC GCACCAAGGC GACCAAGTAA
|
|---|
| Protein sequence | MKFFRTIALS SVALAVASMS MAADNIKIGL QGPLTGGSSP MGVSMRDGAK LAVTEINAHG
GLLGRKIEMI ERDDEAKNER GVQIAQELIN KEKVVATVGY INSGVALASQ RFYQEAKIPV
MNNVATATTI TQQFADQPQN YVFRNSANDT IQSTLIVEEV IGRRKYTKVA ILADSTNYGQ
LGRADLEKAL AAKGITPVAT EKYNIKDVDM TPQLLKAKEA GAQVVITYGI GPELAQIANG
MIKLGWKVPM MGSWTLSMGN FIDNAGKNAD DALMPQTFIQ EGNTPKRKSF IDAYQKTYKV
TRIPSPVSAA QGYDSIYLLA AAIKQAGSTE GPKVLAALED LKTPVEGVVT TYNKPFSKAD
HEAITLNMPV IGKVQDGHVV YAYEDDKKKG GEVRTKATK
|
|---|
| |