Gene Rfer_1838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1838 
Symbol 
ID3963013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1976472 
End bp1977671 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content55% 
IMG OID637916658 
Productextracellular ligand-binding receptor 
Protein accessionYP_523095 
Protein GI89900624 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000495341 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTT TTCGTACCAT TGCATTGAGC TCAGTCGCCC TCGCCGTCGC ATCCATGAGT 
ATGGCGGCTG ACAACATCAA AATTGGCTTG CAAGGGCCGC TCACCGGCGG CTCCAGCCCC
ATGGGCGTTT CGATGCGCGA CGGTGCCAAG TTGGCCGTGA CCGAGATCAA CGCCCATGGC
GGCTTATTGG GACGCAAGAT CGAGATGATC GAGCGTGATG ATGAAGCCAA AAACGAGCGC
GGTGTGCAAA TCGCCCAAGA GCTGATCAAC AAAGAAAAAG TGGTGGCCAC GGTGGGCTAC
ATCAACTCCG GCGTAGCGCT GGCGTCACAG CGCTTTTACC AGGAAGCCAA GATTCCGGTG
ATGAACAACG TGGCCACGGC CACCACCATC ACCCAGCAGT TTGCCGATCA GCCGCAAAAC
TACGTGTTTC GCAACTCAGC CAATGACACC ATCCAGTCAA CTTTGATTGT GGAAGAAGTC
ATTGGTCGTC GCAAATACAC CAAGGTCGCC ATCCTGGCAG ACTCCACCAA CTACGGCCAG
CTTGGCCGGG CTGATCTGGA AAAAGCCTTG GCTGCCAAGG GCATTACCCC TGTTGCCACA
GAAAAGTACA ACATCAAGGA TGTCGATATG ACACCGCAGT TGCTCAAGGC CAAAGAAGCT
GGCGCACAGG TCGTGATCAC CTATGGTATT GGCCCGGAAC TGGCGCAAAT TGCCAACGGC
ATGATCAAGC TGGGCTGGAA GGTTCCAATG ATGGGTTCCT GGACCTTGTC CATGGGCAAC
TTCATTGACA ACGCCGGTAA AAATGCCGAC GACGCCCTGA TGCCACAAAC CTTTATTCAA
GAAGGCAACA CGCCCAAGCG CAAGAGTTTC ATCGATGCCT ACCAAAAGAC TTACAAGGTG
ACTCGCATTC CGTCACCAGT GTCTGCAGCG CAAGGCTACG ATTCGATCTA TTTGCTGGCC
GCCGCTATCA AACAGGCCGG CTCAACGGAA GGCCCCAAAG TGCTGGCAGC ATTGGAAGAC
TTGAAGACCC CGGTCGAAGG TGTGGTCACC ACCTACAACA AGCCTTTTTC CAAGGCAGAC
CATGAGGCTA TCACCCTCAA CATGCCGGTG ATTGGCAAGG TTCAAGATGG TCACGTGGTC
TACGCCTACG AAGACGACAA GAAGAAGGGC GGCGAAGTCC GCACCAAGGC GACCAAGTAA
 
Protein sequence
MKFFRTIALS SVALAVASMS MAADNIKIGL QGPLTGGSSP MGVSMRDGAK LAVTEINAHG 
GLLGRKIEMI ERDDEAKNER GVQIAQELIN KEKVVATVGY INSGVALASQ RFYQEAKIPV
MNNVATATTI TQQFADQPQN YVFRNSANDT IQSTLIVEEV IGRRKYTKVA ILADSTNYGQ
LGRADLEKAL AAKGITPVAT EKYNIKDVDM TPQLLKAKEA GAQVVITYGI GPELAQIANG
MIKLGWKVPM MGSWTLSMGN FIDNAGKNAD DALMPQTFIQ EGNTPKRKSF IDAYQKTYKV
TRIPSPVSAA QGYDSIYLLA AAIKQAGSTE GPKVLAALED LKTPVEGVVT TYNKPFSKAD
HEAITLNMPV IGKVQDGHVV YAYEDDKKKG GEVRTKATK