| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1825 |
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| Symbol | |
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| ID | 3961066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1961427 |
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| End bp | 1964066 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637916647 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523084 |
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| Protein GI | 89900613 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGC CGATCAAAGT CCTGATCGTC GAGGACTCCG AAGACGACGC AATATTGGCA
CTGCGGGCGC TGCATCGCGG CGGGTTCGAC CCGACGCACC AGCGTGTCCA GACGGCGGCG
GGCCTGCAAG CCGCGCTGGC GCAGGAACGC TGGGACGCCG TCATCTCGGA TTTCAGCATG
CCGGGTTTCA CCGGCCTGGA GGCGCTCGAA ATTTTCCGCT CGGCCGGCCT CGATATTCCG
TTCATCCTCA TTTCCGGCAC CATCGGCGAG GCCACCGCCG TGGCCGCGAT GAAGGCCGGC
GCCAGCGACT ACATGATGAA GTCGAGCCTC GCGCGGCTTG CGCCGGCGCT GGAACGTGAA
CTGAAAGAAG CGCAAATCCG TGCGGCCAAT CAGCGAGCTC AAGCGGCGCT GATTGACAGC
GAAGAGCGAT TCCGGCAGAT GGCGGAGAAC ATCCGCGACG TGTTCTTCCT CGCCGACGTG
GAGGACGAAC GGATTTTGTA TGTCAGCCCA GCCTACGAAG AAATTTGGGG CCGCAGCAGC
GAAAGCCTGT ACGCGAATCC GCAATCGTGG ACCGAGGCGG TCCACCCGGA TGATCGGGCG
TCGGCCTACG AAAAATACGG GCAGATCGTG TCGGCAGGCA AAACCGAGTT CGAGTTTCGG
ATGGTGCGCC CGGATGACTC GATTCGCTGG ATCAAGGTCA GAGGCTTTCC GGTCCGGGAC
GACGCCGACA AGATCGTGCG CATCGCAGGC ATCGCCACCG ACGTCACTGA TCAAAAGACC
GATGCCGAGA AGATCAAGAC TGCGCAGGAC CGGATCACAC ACCTCAACCG CGTGTATGCC
GTGCTGAGCG GCATCAATAC GCTGATCGTG CGCGTGCGCA ACCGCGACGA GCTGTTCAAG
GAGGCGTGCC GGATTGCGGT CGAGGAAGGC GGTTTCCGTA TGGCCATGAT CGCCACTGTC
CATCACAGCA CGACGCAGAT CGTCCCGGTT GCAACTGCGG GCAAGGATGA TGAGCTCATG
ACCGCCATCA ACAATATCTT GTCGTCAAGT GAACATGCGC CCAAGACCAT GAGCGCGCGG
GCAATCCGGG ACAAAAAGGC GGTCGTGTCC AATGCGGCAC AAAACGACCC CCAGGTCTTG
TTTAGCGCGA AATACATCAA AGCCGGCGTC CACTCGATGG CCGTGTTCCC GCTGATTGTC
TCGGACGAAG CCGTGGGTGT GCTGGCGTTG TACGCCAGCG AGACTGAATT TTTCAAGGAA
GAGGAGTTGA AGCTGCTATC GGAATTGGCA GGCGACGTCG CGTTCGCGAT TGATCACATC
GAGAAGCAGG AGCGGCTTAA TTACCTCGTC TACTACGACG TGCTCACGGG ACTGGCCAAC
CGCAGTCTTT TTCTCGAACG GGTGGCGCAG GCCATGCGCA GCGCTGTCAG AAGCGGGGAC
AAACTTGCCT TGTTTCTGAT TGACCTGGAG CGTTTCAAAA ACATCAACGA CAGCCTGGGC
CGACCGGCTG GCGACACGCT GTTAAGGCTG GTAGCAGAGT GGCTGACGAG CAAGGTGGGC
GACGCCAACT TGTTGGCACG CGTCGGTGCT GACCTGTTTG CCGTGGTGCT GCCGGAGGTC
AAGCAGGATG GCGAGGTGGC GCGGGCTCTT GATCAATTGA TGGCCGCTTT TCTGGAGCAT
CCATTCCGGC TGAACGACGC CGTGTTCCGG ATCTCCGCCA AGGTCGGGAT AGCCCTGTTC
CCCTACGACG GTGCTGACAG CGACACCTTG TTCAAGAACG CCGAGTCCGC GCTCAACAAG
GCCAAGACGA GCGGCGAACG CTACCTGTTT TACACACAGA AGATGACGGA TATGGCGGCC
GGCAAGCTGA CGCTGGAAAA CCAGTTGCGC CAGGCGCTCG ACAAAGGTGA GTTCGTGCTC
CATTACCAGC CCAAGGTAAA TCTTGCGAGC GGCAAGATGA CCAGCGCCGA GGCGCTGATT
CGCTGGAACG ACCCGCGCAC GGGCCTGGTG CCACCCGGCC GGTTCATCCC GATCCTCGAA
GAAACCGGAT TGATCCACGA AGTTGGACGC TGGGCGTTGC GCCAGGCCAT CAAAGACGCC
TTGCGCTGGC GCAGCGCGGG CCTGGCCGCC GTGCGCATCG CGGTGAACGT GTCGCCGCTG
CAACTGCGCC ATCGCGGCTT CATCGACGAG ATCAGGCAGG CCATCAGCAT TGACGCACAT
GCGGCCGCTG GGCTGGAACT GGAGATCACC GAAAGCCTGC TGATGGAGAA CGTCCAGCAC
AGCATCACCA GCCTGCACGC GATCCGGGAC ATGGGCGTCA CCCTGGCCAT TGACGACTTT
GGCACCGGTT TTTCCTCGCT CAGCTACTTG TCAAAACTCC CGGTGGACAC GCTGAAGATC
GACCGCTCGT TCGTGATCGA AATGACGGAT GCGCCGGAAA GCCTGGCGCT GGTGTCCACC
ATCATCAGCC TGGCACATGC GCTCAAGCTC AAGGTGGTGG CCGAGGGGGT CGAAACCGAG
GAGCAATCGC GCCTGCTGCA GGTGCTGAAC TGCGATGAAA TCCAGGGTTT TCTATTCAGC
AAACCGGTGC CGAGCGATAT CTTCGAGGCC AAGTACCTGG CCCTGCCCTC CTCCCCTTAA
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| Protein sequence | MNKPIKVLIV EDSEDDAILA LRALHRGGFD PTHQRVQTAA GLQAALAQER WDAVISDFSM
PGFTGLEALE IFRSAGLDIP FILISGTIGE ATAVAAMKAG ASDYMMKSSL ARLAPALERE
LKEAQIRAAN QRAQAALIDS EERFRQMAEN IRDVFFLADV EDERILYVSP AYEEIWGRSS
ESLYANPQSW TEAVHPDDRA SAYEKYGQIV SAGKTEFEFR MVRPDDSIRW IKVRGFPVRD
DADKIVRIAG IATDVTDQKT DAEKIKTAQD RITHLNRVYA VLSGINTLIV RVRNRDELFK
EACRIAVEEG GFRMAMIATV HHSTTQIVPV ATAGKDDELM TAINNILSSS EHAPKTMSAR
AIRDKKAVVS NAAQNDPQVL FSAKYIKAGV HSMAVFPLIV SDEAVGVLAL YASETEFFKE
EELKLLSELA GDVAFAIDHI EKQERLNYLV YYDVLTGLAN RSLFLERVAQ AMRSAVRSGD
KLALFLIDLE RFKNINDSLG RPAGDTLLRL VAEWLTSKVG DANLLARVGA DLFAVVLPEV
KQDGEVARAL DQLMAAFLEH PFRLNDAVFR ISAKVGIALF PYDGADSDTL FKNAESALNK
AKTSGERYLF YTQKMTDMAA GKLTLENQLR QALDKGEFVL HYQPKVNLAS GKMTSAEALI
RWNDPRTGLV PPGRFIPILE ETGLIHEVGR WALRQAIKDA LRWRSAGLAA VRIAVNVSPL
QLRHRGFIDE IRQAISIDAH AAAGLELEIT ESLLMENVQH SITSLHAIRD MGVTLAIDDF
GTGFSSLSYL SKLPVDTLKI DRSFVIEMTD APESLALVST IISLAHALKL KVVAEGVETE
EQSRLLQVLN CDEIQGFLFS KPVPSDIFEA KYLALPSSP
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