| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1791 |
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| Symbol | |
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| ID | 3963311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1926798 |
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| End bp | 1929431 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916614 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_523051 |
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| Protein GI | 89900580 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.420017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTTCTA AGTCTCATCG TTGGCAAAAA ACTGCCATGG CAATTGCGGC TGCTGCGCTT
TTCAGCCTCT GGGGATCGAA TGCAACAGCA CTTTCACTGG GTCGAATCTC CGTCCAATCA
GCGCTTGGTG AGCCTTTGCG TGCGGAAATT GAAGTTCCGG AAATCAATGC AGAAGAGGCA
GCATCGCTCA AGCCGTCTAT TGCATTACCG GAAGCCTTTC GGGCTGCCGG GCTGGAGTAC
AACCCTGCCA TGGCGGCCAT GCAGGTCACG CTTCAAAGAC GTGCTGACGG ACGTGCCTAT
CTTCGTTTGA GCAGCGACCG GGCCATTAAC GATCCGTTCG TTGACATGAT TCTTGTAGCC
AACTGGGCGA CCGGTCGCAT CGTGCGTGAC TACACCCTCT TGTTTGATCC CCCCAGTCTG
CGCAAAGCGC CAGCCACTGC ACCAACCCCA GCTCAAGTCC CGGCGCAAAT TCCAGCCCCA
TCGTCGGCCA GCCGGACCGC TTCAGCTGCG CCTGCATCCT CGAGACCGAT CGCGGGGCCT
GCGGTTGAGC CCGGTCAAAG CCCAGTCAAG CCGATCACAC GCCCTGCTGT CGTTAAAACC
CAGGACACCG AAGCCCACTC AGTAACCGTC AATCCCGGCG ACACGGCCGG CAAAATAGCG
ACGGCGACAA AACCAGCTAA CGTCTCCCTG GACCAGATGC TGGTGGCCTT GCTGCGCGCC
AACCCGGCTG CCTTCATCGG CGACAACGTC AACCGCGTCA AGGCTGGTTC AGTCGTGAAC
ATCCCCACCG CGGCGCAAGC AGAAGCCACG CCTGCCGCAG ACGCCCGCCA GATCATCATT
GCCCAAAGCA AGGACTTCAA CGACTTCCGT AGAAAGCTGG CAGGCGCCGC GCCCAGCGCC
CAGGTCGCAA GTGCAGACCG CACAGCGAGC GGCACGGTGC AGGCCAAAGT TGAGGAGAAA
AAACCCCTCG CCGCAGTACC TGATAAATTG ACATTGTCAA AAGGAGCTAT TCAGGGAACG
TCAGCTGAAG CTCAACTGGC CAAGGAGCGC AATGTCAAGG AGGCTGCCGA CCGGGCGACT
GAAATCGCCA AGAACATCAG TGATCTGGGC AAGTTGGGTG CCGCTTCGAG CGTCGTGGCA
CCCGCTCTGT CGGCATCCGC CGCATCGCCC GCCGCGCCGG ACGCTGCGTC AAACGCCGCC
GCTGTCACAG CCTCGGCACA AGCGGGGTCC GCAGCAGTTT CCGCAAACGC AGTTGTTCCG
TCACCTGGGG TCGGCGCAGC AGCCTCCGCC CCAACGCCAG CCGCTTCGGT AGCCAAGAAA
GTGCCTGCGA TCACCCCCGC TTCTGTGCCC GAACCGGGCC CGCTTGATGA TCTGACCGAT
AGTCCCCTGG CCCTGTCCGG CGCCCTCGGC TTGATCGCCC TGTTAGTCGC CTTTGGACTC
TACCGCAGAA GGCAGCACAA GAAAGTCGCC TCGGGCGACA GTTCATTTCT GGACAGTCGT
TTACAGCCCG ACTCATTCTT TGGTGCCAGT GGTGGTGAAA GTGTCGACAC CAGTGACAAT
GCGGCCACTG GCTCGTCCAT GGTCTACTCG CCCAGCCAGC TTGATGCGGT AGACGATGTT
GACCCCGTCG CTGAAGCCGA TGTCTACCTC GCCTACGGGC GTGATTTGCA GGCAGAGGAA
ATCTTGAAGG ACGCCTTGGT CAGCAACCCC GCACGTCTCG CGATCCATCA GAAGTTGCTT
GAAATTTTCG CCAAGCGCCG TGACGCCAAC AACTTTGAAA AGATGGCCAC CCAGACCTTC
CAGATAACCA AGGGTGAGGG ATCGGACTGG GAGCGCATTT GCCAATTGGG TCTGAGCATT
GACCCGAACA ATGCGCTGTA CCAACCCGGT GGCCAGCCCA ACAATCTGGA TGGCACGCCA
TCTCGTCCGA TGCCTCTCGA CCAGACCGGC AATCTTGCCG GCGGCACGGA TGCACCGGCA
ACACAAGTCG TTACGCCCCA GGTCGGCGGT GCGGTAGACC TCGATCTGGA CCTCGACTTT
TCGCTTGACG AAGAACCCGT CAGCGCCATC AGCGAGACCA AAGCAAGCTA CCCCGAACCC
ACCATCAGCC TGCAGGCGGC CGACGCCCCC CCTGCACTTG ATCTGAACTT TGACCTGATC
GAAGCCACGG CACCTTTTGC AGCCCCCGAG ACCGCTGCGA AGGCCGACGC AGCCAATGGC
CCCGATGCCT TCGAATTCTC GCTGCCCGAC CTGGATACTG CAGACAATGA CCAGGGCCAA
CCGGCTGCGA ACAGCGAAGA TTTCAAACTG CAGGCCGCCA ATAGTTTTGG GCTCACCGGC
CCAGTGCCCT TGCCCGATTC GGCGCCGCCA GCGCCTCCCG CTCCTGATTT AGGCATGCTG
GAATTTGACC TTGGCTCATT GTCCCTTGAT CTGGGGGACG AACCGCCAAC TGAAACCAGC
GCAACGCCTA ACGCACACGG GTATGAAGAC CCGCTGGTCA CCAAGCTGGC ACTGGCAGAA
GAATTCCGCG CAATTGGTGA CGAGGACGGT GCGCGGGCGC TGATTGAAGA AGTGATCTCG
GAAGCCTCGG GCGACATGAA GATCAAGGCG CAGCGCGCTC TGAGCAATCT CTGA
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| Protein sequence | MISKSHRWQK TAMAIAAAAL FSLWGSNATA LSLGRISVQS ALGEPLRAEI EVPEINAEEA
ASLKPSIALP EAFRAAGLEY NPAMAAMQVT LQRRADGRAY LRLSSDRAIN DPFVDMILVA
NWATGRIVRD YTLLFDPPSL RKAPATAPTP AQVPAQIPAP SSASRTASAA PASSRPIAGP
AVEPGQSPVK PITRPAVVKT QDTEAHSVTV NPGDTAGKIA TATKPANVSL DQMLVALLRA
NPAAFIGDNV NRVKAGSVVN IPTAAQAEAT PAADARQIII AQSKDFNDFR RKLAGAAPSA
QVASADRTAS GTVQAKVEEK KPLAAVPDKL TLSKGAIQGT SAEAQLAKER NVKEAADRAT
EIAKNISDLG KLGAASSVVA PALSASAASP AAPDAASNAA AVTASAQAGS AAVSANAVVP
SPGVGAAASA PTPAASVAKK VPAITPASVP EPGPLDDLTD SPLALSGALG LIALLVAFGL
YRRRQHKKVA SGDSSFLDSR LQPDSFFGAS GGESVDTSDN AATGSSMVYS PSQLDAVDDV
DPVAEADVYL AYGRDLQAEE ILKDALVSNP ARLAIHQKLL EIFAKRRDAN NFEKMATQTF
QITKGEGSDW ERICQLGLSI DPNNALYQPG GQPNNLDGTP SRPMPLDQTG NLAGGTDAPA
TQVVTPQVGG AVDLDLDLDF SLDEEPVSAI SETKASYPEP TISLQAADAP PALDLNFDLI
EATAPFAAPE TAAKADAANG PDAFEFSLPD LDTADNDQGQ PAANSEDFKL QAANSFGLTG
PVPLPDSAPP APPAPDLGML EFDLGSLSLD LGDEPPTETS ATPNAHGYED PLVTKLALAE
EFRAIGDEDG ARALIEEVIS EASGDMKIKA QRALSNL
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