| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1778 |
|---|
| Symbol | |
|---|
| ID | 3963298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1913273 |
|---|
| End bp | 1914304 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637916601 |
|---|
| Product | ABC transporter, substrate-binding protein, aliphatic sulphonates |
|---|
| Protein accession | YP_523038 |
|---|
| Protein GI | 89900567 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAC AACTCTTTGC AGGGGCCGGC TCGCGCCGTG GCCTGCTGCG CCTGCTGGCG
GTAAGCGCTG GCATCTGGGG CCTGTCCGGC CCGATTGCAT CCACGGCCCT GGCGCAAGGC
AAGGGCGCGG GTCCCACGCT TTCCCAACTG CGCATTGGCT ACCAAAAATC GGCGGTGAAC
CTGGTCATCG TCAAGCAGCA AACCGTGCTG GAGAAACGCT TTCCCAACAC CCAGATCAAG
TGGATCGATT TCCCCGCCGG GCCGCAGTTG CTGGAAGCGC TGGCGGTAGG CAGCTTGGAA
TTTGGCCTGA CTGGCGACTC GCCACCGGTG TTTGCCCAGG CTGCGGGCAA AGACCTGGTC
TATGTGGGGG CGGAGCCTGC CAAACCCGAG AGCTCGGCCA TTCTGGTGGC CAAAGACTCG
GCGATCAAGA CCCTGGCCGA CCTCAAGGGC AAGAAGATTG CCCTGCAAAA AGGCTCCAGC
GCCCATTACC TGCTGGTCAG CGCGGTGGAA AAAGCCGGTT TGCAGTGGAC GGACATTCAA
CCCATCTACC TGACCCCGGC CGATGCCCGC GCCGCCTTCG AGCGCAAAAG TGTCGATGCC
TGGGCGATCT GGGACCCGTT TTATGCATCC ACCGAGCTCG CCCTGTCACC GCGTGTGCTG
ACCACCGGCA TAGGCCTGTC AAGCAACAAC TCCTTTTACC TCGCCTCCCG CGGCTTTGCC
ACCGACCACC CCGAGGCGCT GGCGGTGTTG TTTGAAGAAC TCAGCCGCGC GGACCAATTT
GTGCAGCAAC ACCGCAGCGA GGCCATCAAG CTGATCGCGG GATTCAGCGG TTTGGATGCG
GGTGTAGTGA GTCTTTTTTT GCAGCGCCGC CCGCCCTCCC CGGTGGGACC GATCACGCCC
GGTACGGTGC GGGCGCAGCA GCGGGTGGCT GACAGCTTCC AGAAGCTGGG CCTGATCCCC
AAGCCGATTG CCGTGGCCGA GATCGTCTGG AGTCCGAAGA CGGCGCACCT GGCAAAAGCC
GCCACCCAAT AA
|
|---|
| Protein sequence | MTQQLFAGAG SRRGLLRLLA VSAGIWGLSG PIASTALAQG KGAGPTLSQL RIGYQKSAVN
LVIVKQQTVL EKRFPNTQIK WIDFPAGPQL LEALAVGSLE FGLTGDSPPV FAQAAGKDLV
YVGAEPAKPE SSAILVAKDS AIKTLADLKG KKIALQKGSS AHYLLVSAVE KAGLQWTDIQ
PIYLTPADAR AAFERKSVDA WAIWDPFYAS TELALSPRVL TTGIGLSSNN SFYLASRGFA
TDHPEALAVL FEELSRADQF VQQHRSEAIK LIAGFSGLDA GVVSLFLQRR PPSPVGPITP
GTVRAQQRVA DSFQKLGLIP KPIAVAEIVW SPKTAHLAKA ATQ
|
|---|
| |